Elusive protein and key to many tropical diseases found after decades of searching

Bradley Van Paridon in Chemistry World:

A chance decision to attend a lecture led to the discovery of an elusive protein and promising drug target for parasites causing some of the world’s most notorious neglected tropical diseases – Chagas disease, sleeping sickness and leishmaniasis. As this protein had been so slippery and hard to track down some had doubted that it even existed in these parasites at all.

Trypanosomes are a group of protozoan parasites transmitted by insect bites that cause sickness, morbidity and death in humans and livestock in developing countries. They are responsible for sickening millions of people every year and cause the deaths of tens of thousands of those infected, but the diseases these parasites cause do not receive the attention others do as they mostly affect poorer people in the Global South.

For decades trypanosome researchers have searched for a protein called Pex3 within the genomes of trypanosomes.

More here.



The endurance of the liberal imagination

James Duesterberg in The Point:

“In the United States at this time,” Lionel Trilling wrote in 1949, “liberalism is not only the dominant but even the sole intellectual tradition.” These words are strange to read today. One cannot imagine someone writing them now and, in retrospect, they suggest a dangerous hubris. And yet it is not clear that, applied either to Trilling’s time or to ours, they are wrong.

Since the global political unraveling in 2016, liberalism has lost its voice. From the “basket of deplorables” to the “#resistance” pins to the eat-pray-love liberalism of “a thousand small sanities,” public defenses of the West’s regnant political ideology ring hollow and desperate. Read the Times or the Post, listen to politicians, sit for a second and catch the mood in the airport: the absence is in the air, not just in our language. Max Weber called twentieth-century governance the “slow boring of hard boards”: they have been bored, and so are we.

To literary critics and political theorists—those whose job it is to front-run the zeitgeist—liberalism now seems not so much an opponent to battle as a corpse to put to rest. It is something to be, at most, anatomized, if not simply buried and forgotten.

More here.

Elgar’s Dream of Gerontius

Sudip Bose at The American Scholar:

In the annals of disastrous musical premieres, that of Edward Elgar’s Dream of Gerontius, which took place on this date in 1900, wasn’t a complete fiasco in the manner of, say, Stravinsky’s Rite of Spring or Bruckner’s Third Symphony. It did not, however, go well—not by any measure. So poor was the performance, so distant the musicians’ execution from Elgar’s most vivid and hopeful imagining, that the experience left the composer despondent. A devout Catholic, he even briefly lost his faith.

Elgar first encountered John Henry Newman’s sprawling poem “The Dream of Gerontius” in 1889, the year he got married. The wedding ceremony was held in St. George’s Church in the English city of Worcester, where Elgar, like his father, had been the organist. The priest at St. George’s marked the occasion by presenting him with a copy of the poem, which Newman had published in 1865—two decades after his conversion from Anglicanism to Roman Catholicism and 14 years before he would become a cardinal.

more here.

How Edward Snowden Found His Conscience

Jacob Silverman at The Baffler:

A series of discoveries, each disturbing in turn, leads to Snowden’s eventual decision to stockpile documents, smuggle them out of the Hawaiian bunker where he works for the NSA, and flee with them to Hong Kong, where he would meet the documentary filmmaker Laura Poitras and journalists Glenn Greenwald and Ewen MacAskill. One such discovery was that of Stellar Wind, a bulk surveillance program that previous NSA whistleblowers had tried to warn lawmakers about. Through these and other programs, through the building of an unprecedentedly massive data center in Utah, through the boasts of a CIA technologist who talks about collecting and computing on all information generated in the world, Snowden begins to understand that “surveillance wasn’t something occasional and directed in legally justified circumstances, but a constant and indiscriminate presence . . . a memory that is sleepless and permanent.” The machine reaches everywhere, collapsing space, time, and memory into a single archive. “I now understood that I was totally transparent to my government,” he acknowledges with the finality of someone accepting a cancer diagnosis. Even the promises of free speech become illusory under the surveillance regime, as “self-expression now required such strong self-protection as to obviate its liberties and nullify its pleasures.”

more here.

Beautiful Terrible Vilna

Daniel Mendelsohn at the NYRB:

Stendhal didn’t like Vilna, either.

In Book Five of his History of Painting in Italy, the author describes Vilna as the site of his own personal trauma, a bad moment that had occurred on June 6, 1812, as he stood, he says, on the banks of the Neman, watching the Grande Armée pass into Russia. This was at the triumphant beginning of Napoleon’s Russian campaign, when there was no reason yet for despair. And yet, he wrote in this book—the manuscript of which, as it happens, he gathered together for the first time while he was in Lithuania, having brought it from Paris and worked on it steadily all the time he was serving in the Armée—he felt a certain sadness pass over him as he watched this innumerable army cross the river, one composed of so many peoples, and which was to suffer the most memorable defeat history can tell of. The glum future that I perceived in the depths of Russia’s endless plains, together with our general’s erratic genius, filled me with doubt. Wearied by these pointless conjectures, I turned my mind to positive thoughts, that faithful stay in all manner of fortune.

more here.

Leapfrog to speciation boosted by mother’s influence

Machteld Verzijden in Nature:

Females of O. pumilio lay eggs on the ground, on a leaf covered by other foliage, where they are fertilized by the male. During the following week, the male ensures that the eggs stay wet, and after the eggs have hatched, the female takes over the parental care. She carries each tadpole on her back (Fig. 1) to a water-filled bromeliad plant, and then returns to feed the tadpole with her unfertilized eggs until it is sexually mature. The authors studied three colour types of O. pumilio, and carried out laboratory experiments involving three set-ups: tadpoles were raised by their biological parents, which were both the same colour; they were raised by their parents, which were of different colours; or they were raised by foster frogs that were not the same colour as the tadpoles’ parents. For all three scenarios, when the female tadpoles became adults, female offspring preferred to mate with males of the same colour as the mother that had reared them.

Yang and colleagues demonstrated that male offspring had an imprinted behaviour, too. These frogs biased their territorial aggression towards males of the same colour as the mother that had reared them.

More here.

Gaugin and Van Gogh’s social networks: two of art’s supposed “great loners” were deeply social painters

Michael Prodger in New Humanist:

For nine weeks in late 1888, two of art’s great loners lived together. The home and studio Paul Gauguin and Vincent Van Gogh shared was the small and unassuming “Yellow House”, just outside the northern city gate of Arles in the south of France. There was an imbalance to the arrangement. Van Gogh thought the older man, a painter he adulated, had arrived from Paris to help him realise his dream of creating an artists’ haven, a “studio in the south”; Gauguin was in fact paid by Theo van Gogh, a successful art dealer and the white sheep of the family, to act as painter-chaperone to his troubled brother.

Initially, the two artists revelled in the stimulation of close companionship: they painted together, drank together, discussed art together, and visited a local brothel together. However, companionability soon turned to conflict due to what Gauguin described as “incompatibility of temperament” and Vincent’s mental state assuming a dangerous edge. The day Van Gogh was hospitalised following the most celebrated act of self-mutilation in art, Gauguin left for Paris and eventually Tahiti and the Marquesas Islands. The two men never saw each other again.​

The painters have been viewed traditionally as men ill at ease in company and itchy with the constraints of society. In pursuit of personal freedom Gauguin left his Danish wife and five children and later France itself. Van Gogh meanwhile was the perpetual outsider, viewed with suspicion in his native Brabant in Holland; in the Borinage in Belgium, where he had a brief spell as a preacher; and in Arles, where his neighbours signed a petition to have the disturbed and disturbing painter removed from the city.

More here.

Friday Poem

Forgiveness

My heart was heavy, for its trust had been
Abused, its kindness answered with foul wrong;
So, turning gloomily from my fellow-men,
One summer Sabbath day I strolled among
The green mounds of the village burial-place;
Where, pondering how all human love and hate
Find one sad level; and how, soon or late,
Wronged and wrongdoer, each with meekened face,
And cold hands folded over a still heart,
Pass the green threshold of our common grave,
Whither all footsteps tend, whence none depart,
Awed for myself, and pitying my race,
Our common sorrow, like a mighty wave,
Swept all my pride away, and trembling I forgave!

by John Greenleaf Whittier

Thursday, October 3, 2019

The Delusion and Danger of Infinite Economic Growth

Christopher F. Jones in The New Republic:

One of the reasons nations fail to address climate change is the belief that we can have infinite economic growth independent of ecosystem sustainability. Extreme weather events, melting arctic ice, and species extinction expose the lie that growth can forever be prioritized over planetary boundaries.

It wasn’t always this way. The fairytale of infinite growth—which so many today accept as unquestioned fact—is relatively recent. Economists have only begun to model never-ending growth over the last 75 years. Before that, they had ignored the topic for a century. And before that, they had believed in limits. If more people saw the idea of infinite growth as a departure from the history of economics rather than a timeless law of nature, perhaps they’d be readier to reimagine the links between the environment and the economy.

In 1950, the economics profession had surprisingly little to say about growth. That year, the American Economic Association (AEA) asked Moses Abramovitz to write a state-of-the-field essay on economic growth. He quickly discovered a problem: There was no field to review.

More here.

Are Neanderthals the same species as us?

Chris Stringer at the website of the British Natural History Museum:

The biological species concept states that species are reproductively isolated entities – that is, they breed within themselves but not with other species. Thus all living Homo sapiens have the potential to breed with each other, but could not successfully interbreed with gorillas or chimpanzees, our closest living relatives.

On this basis, ‘species’ that interbreed with each other cannot actually be distinct species.

Critics who disagree that H. neanderthalensis and H. sapiens are two separate species can now cite supporting evidence from recent genetic research. This indicates that the two interbred with each other when they met outside Africa about 55,000 years ago. As a result, everyone today whose ancestors lived outside Africa at that time has inherited a small but significant amount of Neanderthal DNA, which makes up about 2% of their genomes.

In the face of this seemingly decisive evidence, why do I cling to my belief that Neanderthals and Homo sapiens are distinct species?

More here.

Fidel Castro’s secret love affair with NYC

Tony Perrottet at the BBC:

On a recent sun-drenched afternoon, I was wandering the leafy blocks of West 82nd Street near Central Park, when I came to number 155, a stately Victorian brownstone with a carved stone stoop. Not so different from 1,000 other addresses on Manhattan’s Upper West Side, I thought – except that this is where the young Fidel Castro, a then-unknown 22-year-old Cuban law graduate, stayed on his honeymoon in 1948.

Castro had been a vocal student leader back in Havana, but there was nothing in 1948 to indicate that he would soon lead a revolution on his home island and become one of the most famous and divisive figures of the 20th Century, thrusting Cuba into a bitter Cold War feud with the United States that continues to this day.

It was Castro’s first visit to the US and he fell in love with New York immediately. He was fascinated by the subway, the skyscrapers, the size of the steaks, and the fact that, despite the rabid anti-Communism of the US during the Cold War, he could find Karl Marx’s anti-capitalist jeremiad, Das Kapital, in any bookstore.

More here.

Does Philanthropy Subvert Democracy?

Nick Burns at The Hedgehog Review:

Is modern-day philanthropy a disease in the democratic body politic? Rob Reich, a professor of political science at Stanford University (not to be confused with former secretary of labor Robert Reich), believes that it is. And Reich is not alone. Near-universal outrage over the recent college admissions scandal has left two black eyes on American philanthropy: one for the role of Rick Singer’s fraudulent 501(c)(3) organization, Key Worldwide Foundation, in bribing several elite universities to accept children of privilege; the other for the universities’ susceptibility to such schemes. Reich’s book went to press well before the scandal broke, but it is hard to imagine a better indication of his central claim: that philanthropy amplifies the power of the few at the expense of the many.

Philanthropy, Reich reasons, is necessarily “a form or exercise of power.” Under the current regime, it is an undemocratic sort of power: Bill Gates’s donations to public schools, for example, give him a measure of curricular control that cannot be wrested away at the ballot box. Though Reich favors greater government oversight and a freer hand for representative bodies to regulate charities’ operations, he goes a step further by arguing for the abolition of American philanthropy’s legal mainstay: the tax deduction.

more here.

Michel Foucault: Power and Struggle

Deborah Cook at the TLS:

The lectures reveal the various themes and preoccupations in Foucault’s work in the 1970s and 80s; they also help to contextualize many of the changes in his thought. Still, it is difficult to characterize Foucault’s work. He often denied that he was a theorist, by which he meant someone who works within an overarching system. Describing himself as an experimenter, Foucault frequently underscored the tentative and fragmentary nature of his research. His work is also anti-systematic in the sense that it explores the logic of specific mechanisms, technologies and strategies of power. This exploration requires that close attention be paid to historical conditions whose singularity defies subsumption under a universal history. But Foucault’s antipathy towards systematic thought also meant that he enthusiastically pursued new directions in his research (his later study of care of the self in ancient Greece and Hellenistic Rome is a case in point), and he readily acknowledged the disparities between his earlier and later work.

more here.

Richard Serra Will Jolt You Awake

Peter Schjeldahl at The New Yorker:

Great sculptors are rare and strange. In Western art, whole eras have gone by without one, and one at a time is how these artists come. I mean sculptors who epitomize their epochs in three dimensions that acquire the fourth, of time, in the course of our fascination. There’s always something disruptive—uncalled for—about them. Their effects partake in a variant of the sublime that I experience as, roughly, beauty combined with something unpleasant. I think of the marble carvings of Gian Lorenzo Bernini in Rome: the Baroque done to everlasting death. A feeling of excess in both form and fantasy may be disagreeable—there’s so much going on as Daphne morphs into a tree to escape Apollo, or a delighted seraph stabs an ecstatic St. Teresa in the heart with an arrow. But try to detect an extraneous curlicue or an unpersuasive gesture. Everything works! Move around. A newly magnificent unity coalesces at each step. You’re knocked sideways out of comparisons to other art in any medium or genre. Four centuries of intervening history evaporate. Being present in the body is crucial to beholding Bernini’s incarnations. Painting can’t compete with this total engagement. It doesn’t need to, because great sculpture is so difficult and, in each instance, so particular and even bizarre.

more here.

Could Immunotherapy Treat Diseases Besides Cancer?

Karen Weintraub in Scientific American:

In one type of cancer immunotherapy, immune cells called T cells are removed from the body and engineered to target cells that are only found in cancers. The engineered cells, called chimeric antigen receptor T cells (CAR-Ts), have proved exceedingly effective against some types of blood cancers, particularly acute lymphocytic leukemia. Scientists have now started engineering T cells to attack other disease-related cells.

Cancer was a logical first step for immunotherapies, says Marcela Maus, director of cellular immunotherapy at the Massachusetts General Hospital’s Cancer Center and an assistant professor at Harvard Medical School. The need for life-extending therapies in cancer is indisputable. There is a willingness to take risks to fight tumors that might otherwise be fatal, she says. Doctors are likely to be more cautious in fighting autoimmune diseases, which can be terrible but also have some existing—if imperfect—treatments. Now that the immunotherapy work has proved so successful in cancer, it makes sense to push it into other illnesses, Maus says.

A group led by Aimee Payne, a dermatologist at Penn Medicine, is currently preparing for human trials using reengineered T cells to treat an autoimmune-triggered skin disease called pemphigus. In one subform of the affliction that affects about 4,000 Americans, the immune system produces antibodies against proteins that hold the skin together, resulting in painful, debilitating blisters. Payne and her colleagues direct engineered T cells to destroy the immune cells that make these antibodies, and their work has shown promise in animals. Payne says she got the idea for this approach from all the attention successful CAR-Ts were receiving at Penn Medicine. It seemed so simple in retrospect: “You’re like, ‘Why didn’t we think of this earlier?’” she adds.

More here.

Sugar-coated RNAs could ‘alter the face of biochemistry as we know it’—if they’re real

Robert F. Service in Science:

Sugar isn’t just for sweets. Inside cells, sugars attached to proteins and fats help molecules recognize one another—and let cells communicate. Now, for the first time, researchers report that sugars also appear to bind to some RNA molecules, the cellular workhorses that do everything from translating DNA into proteins to catalyzing chemical reactions. It’s unclear just what these sugar-coated RNAs do. But if the result holds up, it suggests vast new roles for RNA.

The report, posted to the preprint server bioRxiv on Monday, drew immediate Twitter responses verging on the hyperbolic: “a new era is starting!!” wrote one scientist. “A brilliant example of how collaboration … can alter the face of biochemistry as we know it!” wrote another. “This is a mind-blowing result,” tweeted a third. Asked by Science for comment, scientists were somewhat more measured. “This is a profound observation that nobody anticipated,” says Mark Lehrman, a pharmacologist at the University of Texas (UT) Southwestern Medical Center in Dallas who was not involved in the work. That profound observation still spurs caution: Others aren’t yet convinced about the basic findings.

The notion that RNAs might be modified by other molecules isn’t new. Chuan He, an RNA chemist at the University of Chicago in Illinois, notes that researchers have observed some 170 different chemical modifications to RNA—a methyl group here or an acetyl group there—that, among other functions, make sure RNA winds up in one cellular compartment or another. But until now, no one had seen complex sugars modify RNAs.

More here.

Wednesday, October 2, 2019

The problem with the trolley problem

Simon Beard in Quartz:

Imagine you’re driving a trolley car. Suddenly the brakes fail, and on the track ahead of you are five workers you’ll run over. Now, you can steer onto another track, but on that track is one person who you will kill instead of the five: It’s the difference between unintentionally killing five people versus intentionally killing one. What should you do?

Philosophers call this the “trolley problem,” and it seems to be getting a lot of attention these days—especially how it relates to autonomous vehicles. A lot of people seem to think that solving this thorny dilemma is necessary before we allow self-driving cars onto our roads. How else will they be able to decide who lives or dies when their algorithms make split-second decisions?

I can see how this happened. The trolley problem is part of almost every introductory course on ethics, and it’s about a vehicle killing people. How could an “ethical” self-driving car not take a view on it, right?

However, there’s just one problem: The trolley problem doesn’t really have anything to do with the ethics AI—or even driving.

More here.