Self-destructing mosquitoes and sterilized rodents: the promise of gene drives

Megan Scudellari in Nature:

Austin Burt and Andrea Crisanti had been trying for eight years to hijack the mosquito genome. They wanted to bypass natural selection and plug in a gene that would mushroom through the population faster than a mutation handed down by the usual process of inheritance. In the back of their minds was a way to prevent malaria by spreading a gene to knock out mosquito populations so that they cannot transmit the disease. Crisanti remembers failing over and over. But finally, in 2011, the two geneticists at Imperial College London got back the DNA results they’d been hoping for: a gene they had inserted into the mosquito genome had radiated through the population, reaching more than 85% of the insects’ descendants1.

It was the first engineered ‘gene drive’: a genetic modification designed to spread through a population at higher-than-normal rates of inheritance. Gene drives have rapidly become a routine technology in some laboratories; scientists can now whip up a drive in months. The technique relies on the gene-editing tool CRISPR and some bits of RNA to alter or silence a specific gene, or insert a new one. In the next generation, the whole drive copies itself onto its partner chromosome so that the genome no longer has the natural version of the chosen gene, and instead has two copies of the gene drive. In this way, the change is passed on to up to 100% of offspring, rather than around 50% (see ‘How gene drives work’).

More here.

Tuesday, July 9, 2019

‘In India, it’s pathological authoritarianism’ —Akeel Bilgrami

Jipson John and Jitheesh P. M. in Frontline:

You have pointed out the role of liberalism in keeping out the New Deal and the social democratic ideals of [Bernie] Sanders and [Jeremy] Corbyn. And you were highly critical of liberalism for that reason. You also said that liberalism is ensuring that nothing in the political arena is conceptually available for a fundamental transformation of society. But you are not equating social democracy with a fundamental transformation of society, are you? We know, from your writings, that you believe that social democracy does not amount to a radical critique of capitalism. So, then, can you explain what you have in mind exactly?

That raises a whole range of very familiar and long-standing issues that have afflicted the Left, leading to debates in India (and no doubt in other places as well) between the organised Left and what has come to be called the “ultra-Left” and the insurgent Left.

I think that what is true and what everybody knows is that liberalism in the 20th century has, as I’ve put it in some of my writing, “taken social democracy in its stride”, that is, taken in its stride the social-democratic constraints that had been put on capitalism after the end of the Second World War. But the point of the expression “take in its stride” should not be seen as merely saying that liberalism is able to accommodate these constraints in its doctrinal framework because they don’t constitute a fundamental critique of capitalism. What more is connoted by “take in its stride” is very important, in fact absolutely crucial, in understanding capitalism today and the ideological role of liberalism and the exact nature of the accommodation.

So, what would be this “more” you would add to the nature of the accommodation?

It is this. Liberalism takes social democracy in its stride not only by accommodating social democracy but also by making sure that the accommodation is always constantly being undermined, even as it is allowed to be there. In other words, social democracy should not be allowed an equilibrium (leave alone strengthening) within its accommodated status. That is the point of liberalism and it recurs everywhere. Even the Scandinavian countries are subject to it, though, of course, being more peripheral than the main belt of capitalism, social democracy there has not been so recurrently subject to this disequilibrium and instability in its status as in other parts of the capitalist world. So, when one says liberalism accommodates social democracy, we must be absolutely clear that that accommodation is never stable and is never going to be allowed to be stable.

More here.  The first part of this two-part interview can be found here.

Sean Carroll’s Mindscape Podcast: Indre Viskontas on Music and the Brain

Sean Carroll in Preposterous Universe:

It doesn’t mean much to say music affects your brain — everything that happens to you affects your brain. But music affects your brain in certain specific ways, from changing our mood to helping us learn. As both a neuroscientist and an opera singer, Indre Viskontas is the ideal person to talk about the relationship between music and the brain. Her new book, How Music Can Make You Better, digs into why we love music, how it can unite and divide us, and how music has a special impact on the very young and the very old.

More here.

Before Ta-Nehisi Coates: On James Alan McPherson’s “Crabcakes”

Anya Ventura in the Los Angeles Review of Books:

JAMES ALAN MCPHERSON’S memoir Crabcakes begins with the death of his tenant, Mrs. Channie Washington. A traditional memoir might have sketched McPherson’s upbringing: the strapped childhood in segregated Savannah, Georgia, as the son of an electrician and a maid, and his ascent to Harvard Law School in the late ’60s. He might have noted that during that time, his short story “Gold Coast” won a competition sponsored by The Atlantic, and that two years later, with the story collection Hue and Cry already under his belt, he received his MFA from the Iowa Writers’ Workshop. He could have also mentioned that his second collection Elbow Room, published in 1977, earned him a Pulitzer Prize: the first African American to win one for fiction.

In 1981, McPherson was among the first to be awarded a MacArthur “genius” grant. A different kind of narrative might have illuminated all these facts — a true Horatio Alger story — yet McPherson includes none, nor does he elaborate his pains (to the dismay of early critics, who grappled with this absence of biographic detail). Instead, in courteous and precise prose, he begins with Mrs. Washington.

More here.

The End of The Liberal World as We Know It?

James Wang at Eurozine:

In short, Western narratives about China throughout the 1990s hinged on the logic that capitalist development must end with liberal democracy. In hindsight, however, precisely the opposite seems to have occurred in the People’s Republic. Rather than being a political albatross on the Party’s neck, the legacy of Tiananmen, the chaotic aftermath of Soviet collapse, and the difficulties in bridging east-west divisions in Europe, has paradoxically bolstered the Party’s legitimacy in China. Indeed, public opinion surveys in recent years have consistently found that a majority of Chinese citizens are not only content with the Party’s leadership but broadly more optimistic about their personal future and that of their country relative to those polled in the West. The same surveys also found that Chinese people tend to be unsympathetic to proposals for major shifts in China’s current political framework. Moreover, positive opinions regarding one-party rule in China seem to have consistently grown in the last two decades.

In the Party’s own triumphalist narrative, 1991 and 1999 stand out as two watershed moments. From Beijing’s perspective, the anarchy of the collapse of the Soviet Union, and Yeltsin’s cynical crushing of parliamentary opposition, furnished a perfect counter-narrative to June 4th, 1989. As Russia, China’s former Cold War arch-rival, sank into economic freefall, rampant corruption, and a period of geopolitical irrelevancy, China’s communist party leadership was able to guarantee political stability and engineered three decades of uninterrupted economic growth.

more here.

What’s the Use of Beauty?

Cody Delistraty at The Paris Review:

The halo effect is a type of cognitive bias in which your initial superficial assessment of a person influences your perception of their other, more ambiguous traits. In the name of cultural journalism, I conducted an informal experiment to test this. I posted five different photographs of myself to a website called Photofeeler, which people mostly use for their acting headshots, company photographs, and online dating profiles. Strangers vote on your attractiveness, trustworthiness, and intelligence, and, using a weighted algorithm, the website tells you the percentile you’re in compared with the rest of the people on the website so you can choose the best photograph. The photo of mine that was voted the most attractive—my fingers awkwardly crinkled around a wineglass on a terrasse—was the one in which I was voted smartest and most trustworthy. The photograph in which I was deemed ugliest—sitting in a cab—was the one in which I was voted dumbest and least trustworthy. In every photograph, my perceived attractiveness determined my perceived trustworthiness and intelligence, traits that, of course, are impossible for anyone to actually know from a picture.

more here.

Nobody Hated as Many People as Lillian Ross Did

Andrew O’Hagan at the LRB:

Great reporting isn’t usually harmed by the reporter having a poor character. It may even be improved by it. Lillian just happened to be hard-bitten in the right way. Her pieces relied on a ruthlessness, sometimes a viciousness, that she didn’t try to hide and that other people liked to comment on. She talked a lot about not being egotistical and so on, but reporters who talk a great deal about not obtruding on the reporting are usually quite aware, at some level, that objectivity is probably a fiction, and that they are most present when imagining they’re invisible. (Lillian was in at least two minds about this, possibly six. One minute she’d say a reporter had to let the story be the story, the next she’d say it was ridiculous: a reporter is ‘chemically’ involved in the story she is writing.) By the time I knew her, Lillian was struggling against a sense that she had caused pain to Shawn’s widow, Cecille, who was still alive, and permanently changed the public view of that most quiet and dedicated of New Yorker editors. Though I liked the book, I believed she was fooling herself if she thought there wasn’t something more than candour at work in her portrayal of Shawn’s family and the reality of his life with them. She claimed she was his ‘real’ wife and that her adopted son, Erik, was ‘theirs’. She knew this was tendentious and took out her anxiety on people who pointed it out.

more here.

Not a Human, but a Dancer

Ed Yong in The Atlantic:

Before he became an internet sensation, before he made scientists reconsider the nature of dancing, before the children’s book and the Taco Bell commercial, Snowball was just a young parrot, looking for a home. His owner had realized that he couldn’t care for the sulfur-crested cockatoo any longer. So in August 2007, he dropped Snowball off at the Bird Lovers Only rescue center in Dyer, Indiana—along with a Backstreet Boys CD, and a tip that the bird loved to dance. Sure enough, when the center’s director, Irena Schulz, played “Everybody,” Snowball “immediately broke out into his headbanging, bad-boy dance,” she recalls. She took a grainy video, uploaded it to YouTube, and sent a link to some bird-enthusiast friends. Within a month, Snowball became a celebrity. When a Tonight Show producer called to arrange an interview, Schulz thought it was a prank.

Among the video’s 6.2 million viewers was Aniruddh Patel, and he was was blown away. Patel, a neuroscientist, had recently published a paper asking why dancing—a near-universal trait among human cultures—was seemingly absent in other animals. Some species jump excitedly to music, but not in time. Some can be trained to perform dancelike actions, as in canine freestyle, but don’t do so naturally. Some birds make fancy courtship “dances,” but “they’re not listening to another bird laying down a complex beat,” says Patel, who is now at Tufts University. True dancing is spontaneous rhythmic movement to external music. Our closest companions, dogs and cats, don’t do that. Neither do our closest relatives, monkeys and other primates.

More here.

New Weapons Against Cancer: Millions of Bacteria Programmed to Kill

Carl Zimmer in The New York Times:

Scientists have used genetically reprogrammed bacteria to destroy tumors in mice. The innovative method one day may lead to cancer therapies that treat the disease more precisely, without the side effects of conventional drugs. The researchers already are scrambling to develop a commercial treatment, but success in mice does not guarantee that this strategy will work in people. Still, the new study, published on Wednesday in the journal Nature Medicine, is a harbinger of things to come, said Dr. Michael Dougan, an immunologist at Massachusetts General Hospital in Boston. “At some point in the future, we will use programmable bacteria for treatment,” said Dr. Dougan, whose research laid some groundwork for the new study. “I think there’s just too much potential.”

Our immune cells can sometimes recognize and destroy cancer cells without assistance. But tumors may hide from the immune system by taking advantage of a gene called CD47. Normally, the gene makes a protein that studs the surface of red blood cells, a kind of sign that reads, “Don’t Eat Me.” Immune cells see it, and pass by healthy red blood cells. But as red blood cells age, they lose CD47 proteins. Eventually the immune cells no longer give them a free pass, gobbling up old cells to make way for new ones. Mutations in cancer cells can cause them to switch on the CD47 gene. The immune system sees these cells, too, as harmless, allowing them to grow into dangerous tumors.

In recent years, scientists have been developing antibodies that can attach to CD47 proteins on cancer cells, masking the “Don’t Eat Me” sign. Then the body’s immune cells learn to recognize the cancer cells as dangerous and attack.

More here.

Monday, July 8, 2019

3 Quarks Daily Welcomes Our New Monday Columnists

Hello Readers and Writers,

We received a large number of submissions of sample essays in our search for new columnists. Most of them were excellent and it was hard deciding whom to accept and whom not to. If you did not get selected, it does not at all mean that we didn’t like what you sent; we just have a limited number of slots and also sometimes we have too many people who want to write about the same subject. Today we welcome to 3QD the following persons, in alphabetical order by last name:
Fountain-pens-530

  1. Elizabeth Bernstein
  2. Cathy Chua
  3. Mindy Clegg
  4. Marie Gaglione
  5. Christopher Horner
  6. Michael Klenk
  7. Rafaël Newman
  8. Katherine Poore
  9. John Schwenkler
  10. Eric Weiner

I will be in touch with all of you in the next days to schedule a start date. The “Monday Magazine” page will be updated with short bios and photographs of the new writers on the day they start.

Thanks to all of the people who sent samples of writing to us. It was a pleasure to read them all. Congratulations to the new writers!

Best wishes,

Abbas

Sunday, July 7, 2019

When did nature become moral?

Hillary Angelo in Public Books:

When did nature become a good for cities? When did city dwellers start imagining nature to be something they were missing? Today, urbanites’ moral associations with nature are so obvious and widely shared that a recent New Yorker cartoon of a couple at the dinner table was captioned: “Is this from the community garden? It tastes sanctimonious.” For better or worse, most of us are so steeped in this view of nature that it is hard to imagine how it could be otherwise. But it once was.

Many believe that nature became an ethical force in city life—a process Justin Farrell calls the “moralization of nature” for urban inhabitants—on account of 19th-century industrial cities. The lack of access to clean air, water, sunshine, and green space in crowded, polluted urban environments—in contrast to a real nature “out there”—transformed nature from a material into a moral good. These unnatural cities, the argument goes, forced people to see nature as not just something good, but something good for you: spiritually, emotionally, even physically.

Yet if this new version of nature was only a reaction to industrial cities of one era, why should it remain so tenacious and ubiquitous a notion?

More here.

The 50 Best Memoirs of the Past 50 Years

From the New York Times:

“I remember only the women,” Vivian Gornick writes near the start of her memoir of growing up in the Bronx tenements in the 1940s, surrounded by the blunt, brawling, yearning women of the neighborhood, chief among them her indomitable mother. “I absorbed them as I would chloroform on a cloth laid against my face. It has taken me 30 years to understand how much of them I understood.”

When Gornick’s father died suddenly, she looked in the coffin for so long that she had to be pulled away. That fearlessness suffuses this book; she stares unflinchingly at all that is hidden, difficult, strange, unresolvable in herself and others — at loneliness, sexual malice and the devouring, claustral closeness of mothers and daughters. The book is propelled by Gornick’s attempts to extricate herself from the stifling sorrow of her home — first through sex and marriage, but later, and more reliably, through the life of the mind, the “glamorous company” of ideas. It’s a portrait of the artist as she finds a language — original, allergic to euphemism and therapeutic banalities — worthy of the women that raised her.

More here.

Octopus Arms Are Capable of Making Decisions Without Input From Their Brains

Michelle Starr in Science Alert:

With the ability to use tools, solve complex puzzles, and even play tricks on humans just for funsies, octopuses are fiercely smart. But their intelligence is quite weirdly built, since the eight-armed cephalopods have evolved differently from pretty much every other type of organism on Earth.

Rather than a centralised nervous system such as vertebrates have, two-thirds of an octopus’s neurons are spread throughout its body, distributed between its arms. And now scientists have determined that those neurons can make decisions without input from the brain.

More here.

What deterrence looks like

Kenan Malik in Pandaemonium:

The photos of Óscar and Valeria Ramírez, migrants from El Salvador, drowned in the Rio Grande as they tried to cross into the USA, are haunting and distressing, and have sparked outrage and anger in America. Four years ago, images of the Syrian toddler Alan Kurdi washed up on a Turkish beach similarly shocked and horrified Europe.

These deaths are neither accidents nor isolated cases. They are the consequences of immigration policy, on both sides of the Atlantic, that aims at ‘deterring’ migrants. A little boy lying dead on a beach, a father and daughter face down in a river – that is what deterrence looks like.

At least 175 people, including 13 children, have died on the US-Mexican border this year alone. More than 2000 have died over the past 5 years. The European figures are more startling still. Almost 600 people have drowned in the Mediterranean so far this year. Since 1993, some 35,000 have died. Thousands more, perhaps tens of thousands more, will have perished in silence, their deaths never recorded. Alan Kurdi and Óscar and Valeria Ramírez are merely the cases in which the imagery was shocking enough to have caught public attention.

Immigration controls today mean not simply a border guard asking you for your papers. They constitute a violent, coercive, militarised system of control. When a journalist from Der Speigel magazine visited the control room of Frontex, the EU’s border agency, he observed that the language used was that of ‘defending Europe against an enemy’.

More here.

Keith Haring’s urgent optimism: The genius of the New York street artist, whose star burned fast and acid bright

Thomas Calvocoressi in New Statesman:

March 2019: a woman is standing in front of some Swatch watches on a daytime TV antiques show. The presenter asks which is her favourite. “Probably this one,” she answers, pointing to a watch adorned with a cartoon barking mutt. “I just like the dog – it makes me smile.” The story of how Keith Haring’s symbols became so ubiquitous that they ended up on the wrists of Middle England as much as on the bedroom walls of 1980s Aids activists is both the contradiction and the genius of the New York street artist, whose star burned fast and acid bright. Tate Liverpool’s superb retrospective traces Haring’s ten-year flight from street artist to global consumer brand, from scrawling on the subway to painting the Berlin Wall, and details the turbulent political backdrop behind his work. We know many of his motifs well – the dog, the crawling baby, the three-eyed face – his thick black lines and dancing figures, but there’s nothing superficial about these deceptively simple scrawls.

They’re angry, anguished and urgent, as well as being joyous and optimistic. Apartheid, homophobia, HIV; hedonism, sexual liberation and the power of love. His influences range across cartoons, hip hop, video games, Egyptian hieroglyphics, Japanese calligraphy and Art Brut. Above all they fizz with a relentless energy; the feeling that Haring is in a (very real) race against time to cover every surface.

Having moved from small-town Pennsylvania to New York in 1978 to go to art college, he began honing an artistic language that used symbols to express his social message. The subway became his canvas. While other graffiti artists were spraying paint on walls, Haring chose white chalk for his strikingly effective sketches, like post-industrial cave paintings, allowing him to reach the largest and most diverse possible audience. And they were certainly noticed. Videos showing commuters’ reactions to his guerrilla art are amusing to watch: some disapproving, others enthralled. What is striking is the grimness of the setting: early-1980s New York was hollowed out, depressed and bankrupt. In contrast, Haring’s work is overwhelmingly positive – a gift to the public. Alongside the pulsating bodies and TVs, the robots and breakdancers, come cheering messages: “New Year ’84”, “Happy Valentine’s”, “Still alive in ’85”.

More here.

Sunday Poem

Zen of Housework

I look over my own shoulder
down my arms
to where they disappear under water
into hands inside pink rubber gloves
moiling among dinner dishes.

My hands lift a wine glass,
holding it by the stem and under the bowl.
It breaks the surface
like a chalice
rising from a medieval lake.

Full of the grey wine
of domesticity, the glass floats
to the level of my eyes.
Behind it, through the window
above the sink, the sun, among
a ceremony of sparrows and bare branches,
is setting in Western America.

I can see thousands of droplets
of steam—each a tiny spectrum—rising
from my goblet of grey wine.
They sway, changing directions
constantly—like a school of playful fish,
or like the sheer curtain
on the window to another world.

Ah, grey sacrament of the mundane!

by Al Zolynas
from
A Book of Luminous Things
Harcourt Brace, 1996