Biologists Rethink the Logic Behind Cells’ Molecular Signals

Philip Ball in Quanta:

Back in 2000, when Michael Elowitz of the California Institute of Technology was still a grad student at Princeton University, he accomplished a remarkable feat in the young field of synthetic biology: He became one of the first to design and demonstrate a kind of functioning “circuit” in living cells. He and his mentor, Stanislas Leibler, inserted a suite of genes into Escherichia coli bacteria that induced controlled swings in the cells’ production of a fluorescent protein, like an oscillator in electronic circuitry.

It was a brilliant illustration of what the biologist and Nobel laureate François Jacob called the “logic of life”: a tightly controlled flow of information from genes to the traits that cells and other organisms exhibit.

But this lucid vision of circuit-like logic, which worked so elegantly in bacteria, too often fails in more complex cells.

More here.

Mark Blyth: The system increasingly works only for the uber-wealthy

Mark Blyth in The Guardian:

I travelled to New York City in August for the first time since the pandemic began, to visit friends who had just bought their first home. They are firmly upper-middle class and in their 40s. They took out a mortgage for $1.5m (£1.1m) to buy a place in a Brooklyn neighbourhood that was regarded until recently as an area immune to gentrification. So far, so typical. Asset ownership comes late these days.

On the second day of my visit I saw a group of twenty- and thirtysomethings sitting together in a local park (of the type illuminated by sodium lights to discourage drug dealing). They had gathered around a banner announcing a meeting of the local tenants’ rights union. Almost every member of the group looked as if they could have featured in the pages of an Ivy League magazine. All bar one were white. Their neighbourhood was not.

I asked my host to explain this. She said real-estate investors were buying up single family homes, bulldozing them and building slick new apartment blocks. Given the stagnant supply of housing and the increasing demand for places to live, local rents were now “crazy”, and relatively wealthy residents were forming tenants’ unions. “Housing is now an asset class for the uber-rich,” she said. “What do you expect?”

We’ve all got used to the claim that housing is now an asset class, but few of us really think through what that means, or how we got here.

More here.

Wednesday Poem

First Milk

After all that birth, the legs you’ve used your whole life
are now wobbly & the lake where your son used to swim

trickles from between them. The spaces between your fingers
feel sticky. The first thing the baby does is search for the warmth

of   you, his face a small suction cup for the mounds you’ve been
building. Those first golden drops, thick as honey, spill from you

& the nurse rushes to catch them with a plastic spoon. God forbid
they soak your hospital gown or run down your rib cage. Once, you were

a girl with two breasts like the smallest constellation, an incomplete ellipsis.
Today, they find new purpose. Today they are nourishment & comfort,

food, water, some kind of magic. They work so hard after years
of  thinking themselves merely decorative.

by Danni Quintos
from Poetry magazine, September, 2021

A meander around many circulatory systems

Henry Nicholls in Nature:

Rich in meaning and metaphor, the word ‘heart’ conjures up many images: a pump, courage, kindness, love, a suit in a deck of cards, a shape or the most important part of an object or matter. These days, it also brings to mind the global increase in heart attacks and cardiovascular damage that attends COVID-19. As a subject for a book, the heart is an organ with a lot going for it.

Enter zoologist Bill Schutt. His book Pump refuses to tie the heart off from the circulatory system, and instead uses it to explore how multicellular organisms have found various ways to solve the same fundamental challenge: satisfying the metabolic needs of cells that are beyond the reach of simple diffusion. He writes of the co-evolution of the circulatory and respiratory systems: “They cooperate, they depend on each other, and they are basically useless by themselves.” At his best, Schutt guides us on a journey from the origin of the first contractile cells more than 500 million years ago to the emergence of vertebrates, not long afterwards. He takes in, for example, horseshoe crabs, their blood coloured blue by the presence of the copper-based oxygen-transport protein haemocyanin (equivalent to humans’ iron-based haemoglobin).

We learn that insects, lacking a true heart, have a muscular dorsal vessel that bathes their tissues in blood-like haemolymph. Earthworms, too, are heartless but with a more complex arrangement of five pairs of contractile vessels. Squid and other cephalopods have three distinct hearts. The are plenty of zoological nuggets to enjoy along the way. The tubular heart of a sea squirt, for instance, contains pacemaker-like cells that enable it to pump in one direction and then the other. Some creatures need masses of oxygen, others little, leading to more diversity. The plethodontids (a group of salamanders) have neither lungs nor gills, he explains: their relatively small oxygen requirements are met by diffusion through the skin.

More here.

Making Eye Contact Signals a New Turn in a Conversation

Lydia Denworth in Scientific American:

What is found in a good conversation? It is certainly correct to say words—the more engagingly put, the better. But conversation also includes “eyes, smiles, the silences between the words,” as the Swedish author Annika Thor wrote. It is when those elements hum along together that we feel most deeply engaged with, and most connected to, our conversational partner, as if we are in sync with them. Like good conversationalists, neuroscientists at Dartmouth College have taken that idea and carried it to new places. As part of a series of studies on how two minds meet in real life, they reported surprising findings on the interplay of eye contact and the synchronization of neural activity between two people during conversation. In a paper published on September 14 in Proceedings of the Natural Academy of Sciences USA, the researchers suggest that being in tune with a conversational partner is good but that going in and out of alignment with them might be better.

Making eye contact has long been conceived as acting like a cohesive glue, connecting an individual to the person with whom they are talking. Its absence can signal social dysfunction. Similarly, the growing study of neural synchrony has focused on the positive aspects of alignment in brain activity between individuals.

In the new study, by using pupil dilation as a measure of synchrony during unstructured conversation, psychologist Thalia Wheatley and graduate student Sophie Wohltjen found that the moment of making eye contact marks a peak in shared attention—and not the beginning of a sustained period of locked gazes. Synchrony, in fact, drops sharply after looking into the eyes of your interlocutor and only begins to recover when you and that person look away from each other. “Eye contact is not eliciting synchrony; it’s disrupting it,” says Wheatley, senior author of the paper.

More here.

This Isn’t the Essay’s Title

Ed Simon at The Millions:

On a December morning in 1947 when three fellows at Princeton’s Institute for Advanced Study set out for the Third Circuit Court in Trenton, it was decided that the job of making sure that the brilliant but naively innocent logician Kurt Gödel didn’t say something intemperate at his citizenship hearing would fall to Albert Einstein. Economist Oscar Morgenstern would drive, Einstein rode shotgun, and a nervous Gödel sat in the back. With squibs of low winter light, both wave and particle, dappled across the rattling windows of Morgenstern’s car, Einstein turned back and asked, “Now, Gödel, are you really well prepared for this examination?” There had been no doubt that the philosopher had adequately studied, but as to whether it was proper to be fully honest was another issue. Less than two centuries before, and the signatories of the U.S. Constitution had supposedly crafted a document defined by separation of powers and coequal government, checks and balances, action and reaction. “The science of politics,” wrote Alexander Hamilton in “Federalist Paper No. 9,” “has received great improvement,” though as Gödel discovered, clearly not perfection. With a completism that only a Teutonic logician was capable of, Gödel had carefully read the foundational documents of American political theory, he’d poured over the Federalist Papers and the Constitution, and he’d made an alarming discovery.

It’s believed that while studying Article V, the portion that details the process of amendment, Gödel realized that there was no safeguard against that article itself being amended.

More here.

How testosterone affects society

Alvin Powell in The Harvard Gazette:

Testosterone’s wide-reaching effects occur not just in the human body, but across society, powering acts of aggression, violence, and the large disparity in their commission between men and women, according to Harvard human evolutionary biologist Carole Hooven.

Hooven, lecturer and co-director of undergraduate studies in Human Evolutionary Biology, waded directly into the nature versus nurture debate Thursday evening, laying out her case for the hormone’s function as a foundation for aspects of male behavior. She traced the role of testosterone in the natural world, pointing out its role in differentiating males from females across the animal kingdom. Its far higher levels in males — 10 to 20 times that in females — act as a switch that turns on genes, creating stronger, more heavily muscled individuals, along with more aggressive behavior.

From an evolutionary standpoint, the reason for these differences is the biological imperative to mate, said Hooven, whose recent book, “T: The Story of Testosterone, the Hormone that Dominates and Divides Us,” was published in July.

More here.

Author Sergio Ramírez on ex-comrade Daniel Ortega and Nicaraguan history repeating

Sam Jones in The Guardian:

Sergio Ramírez, Nicaragua’s best-known living writer, hero of the Sandinista revolution, and former vice-president of the volcanic Central American nation, has lived through both tougher times and duller publicity tours.

Even so, the past few days have been – as he puts it, with a degree of understatement – “an odd experience”.

Ramírez always knew his latest novel, Tongolele no sabía bailar (Tongolele Didn’t Know How to Dance), would cause a stir in his homeland. But he confesses to feeling “surprised, bewildered and assaulted” when the regime of his erstwhile comrade, President Daniel Ortega, issued a warrant for his arrest last week, accusing him, among other things, of conspiracy, money laundering, inciting violence and hatred, and undermining national integrity.

To banish any lingering doubts about the government’s extraordinary antipathy towards the 79-year-old author and his works, Nicaraguan customs officers also impounded all copies of the new book on arrival.

More here.

Gilgamesh Dream Tablet to be formally handed back to Iraq

Alison Flood in The Guardian:

A 3,600-year-old tablet showing part of the Epic of Gilgamesh will be formally handed back to Iraq by the US on Thursday.

The tablet, known as the Gilgamesh Dream Tablet, shows parts of a Sumerian poem from the Epic of Gilgamesh, one of the world’s oldest known religious texts. It is believed to have been looted from a museum in Iraq in 1991, and “fraudulently” entered the US in 2007, according to Unesco, the United Nations’ cultural body. It was acquired by Christian arts and crafts retailer Hobby Lobby for display in its museum of biblical artefacts in 2014, and seized by the US Department of Justice in 2019.

The formal handover ceremony will take place at the Smithsonian Institution in Washington DC on 23 September. “This exceptional restitution is a major victory over those who mutilate heritage and then traffic it to finance violence and terrorism,” said Unesco director-general Audrey Azoulay, who will speak at the Washington ceremony. “By returning these illegally acquired objects, the authorities here in the United States and in Iraq are allowing the Iraqi people to reconnect with a page in their history.”

More here.

Taking the ‘Shame Part’ Out of Female Anatomy

Rachel Draper in The New York Times:

Allison Draper loved anatomy class. As a first-year medical student at the University of Miami, she found the language clear, precise, functional. She could look up the Latin term for almost any body part and get an idea of where it was and what it did. The flexor carpi ulnaris, for instance, is a muscle in the forearm that bends the wrist — exactly as its name suggests. Then one day she looked up the pudendal nerve, which provides sensation to the vagina and vulva, or outer female genitalia. The term derived from the Latin verb pudere: to be ashamed. The shame nerve, Ms. Draper noted: “I was like, What? Excuse me?”

It grew worse. When her teacher handed her a copy of the “Terminologia Anatomica,” the international dictionary of anatomical terms, she learned that the Latin term for the vulva — including the inner and outer labia, the clitoris and the pubic mound — was pudendum. Translation: the part to be ashamed of. There was no equivalent word for male genitals.

That’s when she really got fired up.

Anatomy as a science had its start in 16th-century Italy, as the purview of learned men. At the time it was a stretch to find a female corpse, let alone a female anatomist. Little wonder, then, that some words might sound a little off to modern ears. What surprised Ms. Draper was that this one had made it through 500 years of revisions and updates — and virtually no one knew what it meant.

More here.

Tuesday Poem

One more story he said In a restaurant in Amsterdam

a young woman     came in
speaking Arabic     I said you are Iraqi
she said I haven’t eaten for three days
I said what do you mean     she said
I need to turn    turn myself in
this was a strange language to me
a different logic    Come and sit I said
food brought out    she ate   finally
spoke    her husband now in Istanbul
they’d escaped Iraq    he was taxi driver
sold his car paid $5,000 to Turkish driver
to send her    Istanbul to Amsterdam
a big truck     crates of fruit and vegetables
had a tiny space         in the middle    kept her
there gave her food and water supposed to last
seven days    lasted four strange language
mouth of the truck       she was stuck
in one position for seven days       could not
move crates of figs    pallets cracked
blocked      lodged    then they just dropped her
in the middle of Amsterdam right then    she was
hoping waiting    turn myself in    my husband not
far behind    strange language to me    I did not
understand     turn myself in       in the middle
of Amsterdam do you speak                speak

by Phillip Metres
from
To See the Earth (Imagination).
Cleveland State University Poetry Center, 2008

On The Art of Ouattara Watts

Kaelen Wilson-Goldie at Artforum:

MYTHOLOGIES RARELY SERVE the artists who inspire them. Ouattara Watts has now entered his fifth decade of painting. His oeuvre consists of the large-to-monumental canvases he has been making prodigiously for forty-five years, alongside lesser-known watercolors, gouaches, drawings, and collages. Over time, he has developed an expansive and wildly complex visual language. It is also unabashedly joyful, even beautiful, insisting on a universal purpose for painting. More than a body, his is a forest of works, too vast, dense, and important to be detoured by an origin story. And yet the origin story persists, making a circuitous route around but rarely through the work and confounded, perhaps, by some minor confusion over the artist’s name: He was born Bakari Ouattara (in the Ivorian capital Abidjan), nicknamed Ouatts (in his youth) and later Ouatt (in Paris), became known as Ouattara Watts (in New York), and is referred to (almost everywhere) as simply Ouattara.

Inventive and searching, formally dexterous and deeply spiritual, his paintings deserve to be better known.

more here.

Harvest Moon

Nina MacLaughlin at The Paris Review:

In dreams, they anticipated the moon. They anticipated flinging themselves away from the earth up to the glowing pearl in night space. They’d been dreaming this for a long time, who knows how long. The moon, earth’s shadowy white sister, is the ultimate dream object. Even if not dreamed of directly, the moon is dreamtime’s overseer, companion; it’s the quiet warden of the night mind. Lyndon B. Johnson watched the Russian satellite move across the sky and knew: “Second in space is second in everything.” In 1961, John F. Kennedy said, “I believe that this nation should commit itself to achieving the goal, before this decade is out, of landing a man on the moon and returning him safely to the earth.” And thus, we who are earthbound began “to act as though we were dwellers of the universe,” Arendt writes. Perhaps we always have been, but now we have the tools to see.

more here.

Abuse At The Royal Ballet

Luke Jennings at the LRB:

When​ the Royal Ballet returned to Covent Garden earlier this year after fourteen months of cancelled shows and empty auditoriums, its public announcements were upbeat. The new season (which has just opened) would include world premieres by Wayne McGregor, Christopher Wheeldon and Kyle Abraham, alongside classic ballets by Kenneth MacMillan and Frederick Ashton. In May and June, ahead of the full reopening, the company streamed an online programme featuring choreographers closely associated with the Royal Ballet. One name was conspicuous by its absence: Liam Scarlett, the former Royal Ballet artist-in-residence. In March 2020, following accusations of inappropriate behaviour over the previous decade, the company had severed ties with him. Other companies followed suit. In April this year it was announced that Scarlett, who was 35, had died. An inquest opened in May and revealed that he had been ‘admitted to Ipswich Hospital on 12 April due to a cardiac arrest following an attempted hanging’. The inquest will conclude in November.

more here.

Another side to Socrates

by Paul Braterman

A marble head of Socrates
Marble head of Socrates, Roman, 1st Century CE, ?after Lysippos, 4th Century BCE, via Wikipedia

We all know the story. Socrates has been told by the oracle that he is wisest of men, but he considers that he himself knows nothing. Puzzled, he takes to cross-examining his fellow Athenians about their beliefs, and time and again finds that they will not bear examination. As a result, he is indicted on trumped-up charges of impiety and corrupting the young. After a trial in which he eloquently defends his behaviour, he is condemned to death. A martyr to freedom of expression, and a shocking example of democracy suppressing dissent. Surely there is more to the story than that? Indeed there is.

I am not about to commit the folly of denying the greatness of Socrates. We still, twentyfour cenuries later, praise his methods of investigation. I myself have used an argument taken directly from one of Plato’s Socratic dialogues. The topic was practical ethics, Socrates’ speciality; and the technique used, questioning assumed certainties, his favourite tactic.

Here’s what happened. A few years ago, I was involved in a moderately successful campaign  [1] to reduce the statutory role of the Churches in Scotland’s local authority education committees. The Church of Scotland attempted to justify its privileged position by pointing to its distinctive Christian ethos. In reply, I pointed out that to the extent that this ethos is generally shared, we do not need any Church to promote it, while to the extent that it is specific to Christianity, the Churches have no right to impose it on the rest of us.

My reasoning derives directly from Socrates, in The Euthyphro, where Socrates challenges Euthyphro to define pious behaviour. Read more »

Minding the Gender Wage Gap

by Raji Jayaraman

The gender wage gap is a well-documented phenomenon. Many are familiar with the claim that women earn 80 cents on the dollar. A more precise statement would be something like, “In the U.S., according to 2019 CPS data, the ratio of women’s to men’s median earnings for full-time, year-round workers, aged 15 years and older, was 82 cents.” Of course, the precise number of cents to the dollar will vary depending on the year of observation; whether you’re looking at median or mean earnings; what your age cut offs are; and whether you’re including full- and part-time workers. But 80 cents to the dollar is memorable, and it’s not dramatically the mark for many wealthy countries in the Global North. According to Eurostat, the average gender earnings ratio across EU-27 countries is 86 cents; in Canada it is 87 cents. And it’s been stuck somewhere in the eighties for two decades now.

All of this has led to a demand for “Equal pay for equal work,” which is something all reasonable people can rally behind. Governments have thrown considerable policy weight behind this idea for some time now. Equal pay for equal work is a founding principle of the EU. The United States Equal Pay Act prohibiting gender-based pay discrimination was introduced in 1963. Such legislation has been complemented by laws mandating pay transparency by requiring companies to publish data on their gender pay gap—the idea being that that pay secrecy perpetuates gender-based pay discrimination (for example, here and here, with some evidence that such legislation may have narrowed the gap a bit.)

As a woman in economics, I am painfully aware that there exists gender-based discrimination at work (feel my pain here and here). There is even evidence that the same person tends to get lower pay for the same job if he is a she.  That’s unacceptable. Equal pay for equal work! The trouble is that most work is not equal. Work is deeply segregated along gender lines. The problem starts early on. Read more »

What we lose when airlines won’t let us look out the windows

by N. Gabriel Martin

The centrally-controlled dimming windows on newer airliners are an attack on human dignity, an affront to liberty, an insult to the sublimity of flight, and a curse against the beauty of our planet.

Now let me tell you how I really feel. I’ll admit that there might be more important things happening in the world than my inability to look out this window beside me. I can’t think of any right now, though.

No, right now all I can think of are the Greenlandic fjords and glaciers that Air Canada and Boeing are robbing from me. That’s because seeing sights like these are among the great privileges that the modern world has brought into our lives. Or rather, that it used to.

A lot of the talk about air travel is on the deprecating side, and to an extent I understand that. Like any travel, flying is difficult, and it’s gotten more difficult over the past decades as security has increased and low-cost airlines have introduced policies that are intended to inconvenience us (knowing that enough of us will upgrade out of frustration).

But all of those are trifles when compared to the miracle of flight! It is a miracle that I get to soar thousands of feet in the air, without any special training and without having to pay all that much (thanks to those low-cost carriers), while travelling hundreds of miles an hour and while gazing down at the landscape and the clouds.

Flying has allowed me to gaze down at parts of the earth I would not have been able to experience—the Rub’ Al Khali desert, alpine villages, a high peak in the outer Hebrides that scraped through the cloud like outstretched talons. Read more »