The silicon cell

Mitch Leslie in Science:

A human cell swarms with trillions of molecules, including some 42 million proteins and a plethora of carbohydrates, lipids, and nucleic acids. Crowded with organelles and other structures, the cell boasts an intricate organization that makes baroque architecture seem plain. Its cytoplasm is a frenzied chemical lab, with molecules continuously reacting, rearranging, and reshaping. In the nucleus, thousands of genes are constantly switching on and off to turn the seeming chaos into concerted actions that help the cell survive and reproduce.

This complexity is more than the human mind can yet fully understand or predict. But many researchers think artificial intelligence (AI), with its prodigious ability to assimilate and process information, might be up to the task. More than 2 decades ago researchers started to build systems of equations meant to simulate some of the cell’s workings. Now, they have progressed to AI-driven replicas that, like the large language models taking business and popular culture by storm, ingest vast amounts of data to learn on their own. ChatGPT’s attention-grabbing debut nearly 3 years ago inspired the virtual cell builders. “People want this kind of moment for biology,” says 
Kasia Kedzierska, an AI research scientist at the 
Allen Institute.

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Friday Poem

Morning Song of a Fan

a flock of black birds bursts across
the gray sky above a late fall dawn, then
splits in two like a pair of receivers heading
for opposite sidelines

I’m not much of a defender this morning.
let everything score – let the last roses kick
field goals, let the tall, wide-shouldered deodars
plunge over the horizon again and again
watch how in the far pits the sturdy clouds
hunker down against the blitzing light
while perky pyracanthas strut their orangey stuff 

already there is traffic noise as some fans
have left the game before it’s over, yet nobody loses
it’s like that moment at a great stadium when
you’re going off to the john or to get a beer
and you pause on the cold gritty concrete to hear 

the vast, informing silence that coaches everything

by Nils Peterson
10/20/25

 

Enjoying the content on 3QD? Help keep us going by donating now.

The Simplest Argument For Veganism

Bentham’s Bulldog at Bentham’s Newsletter:

Imagine that you found out that your friend raised his own chickens. One day, he invited you into his house and you saw how he treated them. Dozens of chickens were chained up in a cage too small to move, inhaling the feces of those above them. Those chickens, you learned, had been debeaked, meaning their beak had been sliced off with a hot knife, without anesthetic. This probably felt like having their nose cut off.

When his egg-laying hens produced a baby male chick, he would drop it into a shredder because it was useless. He’d force the pigs to give birth in a little concrete cell too small to turn around in, and would kill them by forcing them into a gas chamber. Over decades, he’d genetically engineered the chickens to be so large that they could barely move, and the full weight of their bloated bodies was thus constantly pressed against the metal of the cage. And sometimes, to produce more chickens, he’d hold the female chickens down and inject them with semen from male chickens.

It seems like he is doing something evil! He should stop. Probably you would not return to his house of horrors. More likely, you’d call the police.

But here’s a plausible principle: if it’s wrong to do something, then it’s wrong to pay other people to do it.

more here.

Enjoying the content on 3QD? Help keep us going by donating now.

Thursday, October 30, 2025

The Psychology of “Portnoy”: On the Making of Philip Roth’s Groundbreaking Novel

Steven J. Zipperstein at Literary Hub:

Already in 1967, the same year When She Was Good came out, the first samples of Portnoy’s Complaint were issued in wide-circulation magazines like Esquire and Sport, as well as the highbrow Partisan Review. Indeed, it was there, in that mainstay of the New York intelligentsia, that Roth signaled his departure from the magazine’s austere norms with the chapter entitled “Whacking Off.” Solotaroff’s new paperback journal New American Review ran two excerpted chapters of the novel, the first almost two years before the book’s appearance, the second numbering no fewer than twenty-eight thousand words.

By the time it was published in January 1969, Portnoy’s Complaint was tipped as a phenomenal bestseller. The Washington Post predicted that, for a long time to come, “we will judge our friends by what they say” about Portnoy. Quoting lines from the novel, the Houston Chronicle said—barely a week after its appearance—had already become “a national sport.” Few if any matched Albert Goldman’s excitement, writing in Life: “A savior and scapegoat of the ’60s,” declared Goldman, “Portnoy is destined at the Christological age of 33 to take upon himself all the sins of the sexually obsessed modern man and expiate them in a tragicomic crucifixion.”

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Artificial intelligence could dramatically improve weather forecasting

Hannah Ritchie at Sustainability by Numbers:

The potential for AI to improve weather forecasting and climate modelling (which also takes a long time and uses a lot of energy) has been known for several years now.3 AI models have been tested for one- and two-week forecasts with promising results.4 Scientists will often need to wait weeks for a complex, high-resolution climate model to run; AI might be able to do this hundreds, if not thousands, of times faster.

But a huge trial in India this year has taken a huge step forward. The Indian Ministry of Agriculture partnered with teams of scientists from the Human-Centred Weather Forecasts Initiative, the University of Chicago, California, Berkeley, Bombay, Bangalore, and others.

They sent weekly AI-powered forecasts about the monsoon to 38 million farmers across 13 states in India. These AI forecasts predicted changes in the monsoon that all other ones missed. The forecasts of the timing of the monsoon were sent up to four weeks in advance of its arrival; conventional physics-based modelling usually can’t do it more than five days in advance.

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Rethinking nuclear

Edward A. Friedman at the Oxford University Press blog:

As someone who has spent decades studying the evolution of nuclear energy, I’ve seen its emergence as a promising transformative technology, its stagnation as a consequence of dramatic accidents and its current re-emergence as a potential solution to the challenges of global warming.

While the issues of global warming and sustainable energy strategies are among the most consequential in today’s society, it is difficult to find objective sources that elucidate these topics. Discourse on this subject is often positioned at one or another polemical extreme. Further complicating the flow of objective information is the involvement of advocates of vested interests as seen in the lobbying efforts of the coal, gas and oil industries. My goal has been to present nuclear energy’s potential role in a sustainable energy future—alongside renewables like wind and solar—without ideological baggage.

An additional hurdle that must be overcome in dealing with the pros and cons of nuclear energy is the psychological context in which fear of nuclear weapons and of radiation impedes rational analysis.

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Why Immanuel Kant Still Has More to Teach Us

Adam Kirsch at The New Yorker:

The central insight that these disparate thinkers took from Kant is that the world isn’t simply a thing, or a collection of things, given to us to perceive. Rather, our minds help create the reality we experience. In particular, Kant argued that time, space, and causality, which we ordinarily take for granted as the most basic aspects of the world, are better understood as forms imposed on the world by the human mind.

The parallel with Copernicus turns out to be apt. Before Copernicus and Kepler and Galileo, people assumed that the sun and the planets revolved around the Earth, and justifiably so—that’s how it appears to us when we look up at the sky. It took a lot of close observation and ingenious reasoning for astronomers to understand that this was a trick of perspective, and that in fact it is the Earth that revolves around the sun. Similarly, it is natural for human beings to assume that the way the world appears to us—extended in three dimensions, constantly moving from the past into the future, changing as its different elements interact—is the way it really is. But, Kant maintained, this is also a trick of perspective. Space and time do not exist objectively, only subjectively, as forms of our experience. He wrote that it is “from the human point of view only that we can speak of space, extended objects, etc.”

more here.

Enjoying the content on 3QD? Help keep us going by donating now.

The Best New TV Shows of October 2025

Judy Berman in Time Magazine:

Horror is ubiquitous on TV at this time of year, and those of us who love a good scare—myself very much included—usually look forward to it. Unfortunately, October 2025’s selection of IP expansions (IT: Welcome to Derry, Anne Rice’s Talamasca) and true crime murdersploitation left me mostly cold. You will find one worthwhile serial-killer story among this month’s highlights, though—plus a thriller with the deceptively spooky title Down Cemetery Road, a docudrama that resurrects Margaret Thatcher, an in-depth profile of a filmmaker who stares into the darkness of the human soul, and a dispatch from the delightfully unhinged brain of Tim Robinson.

Mr. Scorsese (Apple TV)

It’s always fascinating to see one great artist consider another. Over the course of a career spanning more than half a century, Martin Scorsese has directed essential documentaries on so many luminaries: Bob Dylanthe Rolling Stonesthe Beatlesthe BandElia KazanFran Lebowitz, and the list goes on. Now, Rebecca Miller—the filmmaker, novelist, daughter of Arthur Miller, and wife of two-time Scorsese leading man Daniel Day-Lewis—has turned her lens on Marty, in an excellent five-part docuseries rightly framed as a “portrait.” It’s immediately clear that Miller was the ideal director for this project, wise about both the psychological toll of uncompromising artistry and the pain artists so often inflict on the people who love them.

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Classic Jonathan Lethem

Justin St. Clair at the LARB:

IN THESE PROFOUNDLY unsettling times, literary criticism can seem a little frivolous. We’re no longer slouching toward some imagined autocratic future; we’re midway through the dissolution of the American experiment. We’ve got concentration camps and mass deportations, the senseless dismantlement of essential federal agencies, military personnel on foot patrol in our nation’s capital. There’s a relentless assault on public media, public education, public service, public health, and anything else that an earlier generation would have reasonably considered to be in the public’s interest. It’s dystopian and thoroughly demoralizing. And the most we can manage, it would seem, is to twiddle our thumbs like so many complicit functionaries, doomscrolling against the inevitable.

In this context, I don’t exactly know what to do with Jonathan Lethem’s latest. And I’m not entirely sure he did either. An anthology decades in the making, A Different Kind of Tension presents, in chronological order, 30 of Lethem’s best short stories, from “Walking the Moons” (1990) to “The Red Sun School of Thoughts” (2024). All, with the exception of the final piece, are available elsewhere, but the paucity of new material in no way diminishes the collection.

more here.

Enjoying the content on 3QD? Help keep us going by donating now.

How Does Daylight Saving Time Affect Circadian Rhythm?

Shelby Bradford in The Scientist:

As countries around the world begin to turn their clocks back an hour, some people may rejoice at the extra time in bed while others might mourn the loss of evening light. For many sleep and circadian rhythm biologists, the end of daylight saving time is an overall positive thing. In fact, many groups, including the Society for Research on Biological Rhythms, have petitioned governments to adopt permanent standard time to improve public health. “Basically, that’s because the body’s clock and social clock will match most closely under a standard time,” said Kevin Koronowksi, a chronobiologist at the University of Texas Health Science Center at San Antonio and member of the Society for Research and Biological Rhythms. Koronowski studies the relationship between circadian rhythm and metabolism.

In humans, the circadian rhythm describes the organization of physiological processes that occur on a roughly 24 hour cycle, creating a biological clock. Although the body internally regulates the genes related to coordinating cells’ clocks, circadian rhythm synchronizes to the light-dark cycles of people’s external environment.1,2 For example, melatonin production increases as the day draws to a close, while cortisol levels rise in the morning.

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Lockdown Drill

As we practice being silent and invisible, a sophomore says,
Would you take a bullet for me, Mrs. Garcia?
……..
In this corner of darkened classroom, teens under furniture,
his inquiry sparks murmurs. Crouching in my dress,
……..
I give him a look that says, You are an insufferable wiseass.
While we wait, in my mind, I try to recite Psalm 23 by heart.
……..
Would you take a bullet for me, Mrs. Garcia? I don’t yet know
that after more drills, future shootings, I soften and see
maybe the boy was scared and deflected fear the best he could.
……..
Though restless, we remain huddled away from the windows.
Fifteen miles down the road is Sandy Hook Elementary.
……..
Over the P.A., the Incident Coordinator gives the all-clear,
delivering us from make-believe that isn’t. I shepherd
……..
students back to Shakespeare, semicolons. Sitting
at their desks, they fill each row, my little ducks.

—–
by Nicole Caruso Garcia

from Rattle Magazine

““A designer launched a line of school shooting sweatshirts, complete with bullet holes. Like many people, I was repulsed. Also this week, Sandy Hook Promise launched a timely PSA called ‘Back to School Essentials.’ As an educator who taught for 15 years in the public school system, this week’s news made me meditate on my own experiences of school lockdown drills that have become necessary, how I have seen them affect me, my colleagues, and our students.”

Enjoying the content on 3QD? Help keep us going by donating now.

Wednesday, October 29, 2025

The Case for Strip Malls, the Antidote to Shiny, Soulless City Luxury

Ismail Muhammad in the New York Times:

We’ve moved beyond what the magazine n+1 identified as the unadorned qualities of post-2008 cityscapes. That insubstantial, flat and gray “fast-casual modernism” is complemented by a social-media-approved cookie-cutter skin that has been thrust upon our major and midsize cities in a dismal consensus. It’s no surprise that New York is getting its very own versions of two neo-yuppie Los Angeles mainstays: the meme-ified health-food store Erewhon and the Los Feliz cafe Maru (which I love, of course). America’s two largest cities have most quickly been reshaped by the internet, succumbing to an epidemic of increasingly blank streets for the moneyed classes, the bicoastal and the terminally online people who covet luxury. It’s possible now to walk down Columbus Avenue and mistake it for Abbot Kinney in Venice Beach.

As a solution, I present a hated staple of American urban infrastructure: the strip mall.

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Cognitivism prevents us from understanding artificial intelligence

Paper by Mehdi Bugallo:

Cognitivism, which has permeated society—as evidenced by the omnipresence of the terms “cognitive” and “cognition”—has perpetuated a traditional view of thought and intelligence as phenomena of inextricable complexity, and therefore phenomena that we can hardly imagine recreating artificially. This approach has prevented us from anticipating and continues to prevent us from understanding what is happening. Behaviorism, on the other hand, allows us to apprehend complexity through the simple processes from which it emerges and provides the framework for understanding current AI. According to this approach, here is what is essential to understand about psychology: the environment shapes the behavior of organisms via two processes, natural selection and associative learning; the first process structures the brain over generations, establishing a “pre-wiring” that provides the basis upon which the second process structures behaviors over the course of the individual’s life.

The idea of artificial neural networks functioning on associative principles is fundamentally simple, and it is not new (Geoffrey Hinton had been working on this idea for decades when he received the Nobel Prize in 2024). But for such a system to yield results, it needed to be able to integrate billions of parameters, something that was only possible with current graphics cards (GPUs); hence the sudden improvement in AI.

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Bill Gates: Three tough truths about climate

Bill Gates at Gates Notes:

Although climate change will have serious consequences—particularly for people in the poorest countries—it will not lead to humanity’s demise. People will be able to live and thrive in most places on Earth for the foreseeable future. Emissions projections have gone down, and with the right policies and investments, innovation will allow us to drive emissions down much further.

Unfortunately, the doomsday outlook is causing much of the climate community to focus too much on near-term emissions goals, and it’s diverting resources from the most effective things we should be doing to improve life in a warming world.

It’s not too late to adopt a different view and adjust our strategies for dealing with climate change. Next month’s global climate summit in Brazil, known as COP30, is an excellent place to begin, especially because the summit’s Brazilian leadership is putting climate adaptation and human development high on the agenda.

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

7 basic science discoveries that changed the world

Michael Marshall in Nature:

From hot springs to DNA forensics

In the summer of 1966, while he was an undergraduate at Indiana University, Hudson Freeze went to live in a cabin on the edge of Yellowstone National Park. He was working for microbiologist Thomas Brock, who was convinced that certain microorganisms were living at surprisingly high temperatures. Dodging bears, and the traffic jams they caused, Freeze visited the hot springs every day to sample their bacteria. On 19 September, Freeze succeeded in growing a sample of yellowish microbes from Mushroom Spring. Under a microscope, he found an array of cells collected from the near-boiling fluids. “I was seeing something that nobody had ever seen before,” says Freeze, now at the Sanford Burnham Prebys Medical Discovery Institute in La Jolla, California. “I still get goosebumps when I remember looking into the microscope.”

More here.

Enjoying the content on 3QD? Help keep us going by donating now.

Wednesday Poem

The Weight of Sweetness

No easy thing to bear, the weight of sweetness.
Song, wisdom, sadness, joy: sweetness
equals three of any of these gravities.

See a peach bend
the branch and strain the stem until
it snaps.
Hold the peach, try the weight, sweetness
and death so round and snug
in your palm.
And, so, there is
the weight of memory:

Windblown, a rain-soaked
bough shakes, showering
the man and the boy.
They shiver in delight,
and the father lifts from his son’s cheek
one green leaf
fallen like a kiss.

The good boy hugs a bag of peaches
his father has entrusted to him.
Now he follows his father
who carries a bagful in each arm.
See the look on the boy’s face
as his father moves
faster, farther ahead, while his own steps
flag, his arms grow weak as he labors
under the weight
of peaches.

Li-Young Lee 1957 –
From Rose (BOA Editions, 1986).

Enjoying the content on 3QD? Help keep us going by donating now.