The Doe’s Song

Leath Tonino in Orion Magazine:

Tonino_image-771x771RICHARD NELSON’S 1997 book, Heart and Blood: Living with Deer in America, doesn’t deal all that much with roadkill, but the few statistics it does provide are overwhelming. By chance I had been overwhelmed with them at breakfast, drinking my coffee, reading at the table in Vermont, before getting in the car for the drive to New Jersey. “Back in 1961 when deer were scarce by present standards,” Nelson writes, “œofficial reports counted fewer than 400 deer killed by cars on [Wisconsin’™s] roads. Just 30 years later, in the 1990s, the number had soared to between 35,000 and 50,000 whitetails killed annually, and the actual figure could be much higher, since injured deer often get away from the highway before dying.” He goes on: The number of deer killed by cars in Boulder [Colorado] varies from 120 to more than 200 each year, and an equal number (if not more) are injured or straggle off to die in the brushland. Deer accidents increase during winter, midsummer, and especially the fall rut. An animal control officer told me, “We’ll pick up two or three dead deer every day in rutting season, plus usually one more that’s injured so badly it has to be euthanized.”

A spring morning, a cup of coffee, the house quiet. I leaned back in my chair and thought about the math. Boulder plus every other city, town, and open road in Colorado. Plus Wisconsin. Plus Florida and California. Plus Vermont and New Jersey. Two or three. Plus usually one more. Between 35,000 and 50,000. Could be much higher. I took a gulp, then took another. Straggle off to die in the brushland.

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Cell maps reveal fresh details on how the immune system fights cancer

Heidi Ledford in Nature:

CellsDetailed maps of the immune cells that surround tumours could suggest fresh therapeutic targets, point out biological markers that can be used to select the patients most likely to respond to a given therapy, and offer insights into the best time to start administering that treatment, according to two studies released on 4 May.

…One team, led by systems biologist Bernd Bodenmiller of the University of Zurich in Switzerland, mapped the immune response to a form of kidney cancer called clear cell renal cell carcinoma2. It focused on two kinds of immune cell, T cells and macrophages. Both can either mount or suppress an immune attack on a tumour, depending on the state that they are in and the proteins they express. Bodenmiller and his colleagues examined samples from 73 people with kidney cancer along with 5 samples of healthy tissue. They analysed 3.5 million cells for the expression of 29 proteins used to characterize macrophages, and 23 to characterize T cells. The results showed that populations of those T cells and macrophages are more varied than previously thought. The team also found that patients who had a particular combination of T cells and macrophages also tended to have fast-progressing cancers. The data show that the current practice of looking at only one or two proteins to infer the state of a T cell or macrophage misses important information, says Kai Wucherpfennig, an immunologist at the Dana–Farber Cancer Institute. “It’s very unlikely that a single marker is sufficient,” he says.

Another study, led by oncologist Miriam Merad of the Icahn School of Medicine at Mount Sinai in New York City, created an atlas of immune cells associated with early-stage lung cancer1. The team compared normal lung tissue and blood with tumour tissue, and found that the young tumours had already begun to alter the immune cells in their neighbourhood. This is a sign that cancer therapies that target the immune system need not be reserved for advanced stages of the disease, says Merad. “It suggests that already, we could act,” she says. “We don’t have to wait until the tumour has spread.”

More here.

Monday, May 8, 2017

Yelahanka: Sketches of a Neighborhood

by Hari Balasubramanian

013My parents live in a two-bedroom flat at the northern end of Bangalore, in a town called Yelahanka. They moved in 2002, two years after I left for grad school in the United States. Over the last fifteen years, as I've continued to live abroad, Yelahanka has become the somewhat unfamiliar home in India, experienced every two years but no more than a few weeks at a time, and always changing each time I visited.

Once a town with a history of its own, Bangalore's explosive growth over the last few decades made Yelahanka part of the greater city. In 2005, when I came to renew my student visa, the highway outside my parents' flat complex, the Bangalore-Bellary road, was being widened in preparation for the new international airport twenty kilometers north. The city seemed then to be splitting at its outer limits: earthmovers raking up heaps of rubble on the roadsides; laborers patiently striking heavy hammers to break existing concrete structures; and uprooted trunks and roots of what had once been massive trees, caked with the red earth of the depths from which they had been dug up. A study based on satellite imagery revealed that Bangalore, once called Garden City for its beautiful parks and tree-lined boulevards, lost 180 square kilometers of its green cover from 2000-2006.

The new airport got going in 2008. A flyover – a separate airport access road to bypass local traffic – was constructed about 50 feet above, supported by giant pillars. In Yelahanka, these pillars landed on the lower road, splitting it in two. Instead of making things easier, the flyover for a long time felt like a major obstruction to the locals, blocking the view, and reducing access to public buses. The traffic, always notorious in India – an ever present cacophony of honks, a jostling for every inch of space between motorbikes, auto rickshaws and newly acquired cars – only got worse as drivers adjusted to the new u-turns and flows.

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Sunday, May 7, 2017

Artificial intelligence will have implications for policymakers in education, welfare and geopolitics

Special report in The Economist:

20160625_SRD004_0In July 2011 Sebastian Thrun, who among other things is a professor at Stanford, posted a short video on YouTube, announcing that he and a colleague, Peter Norvig, were making their “Introduction to Artificial Intelligence” course available free online. By the time the course began in October, 160,000 people in 190 countries had signed up for it. At the same time Andrew Ng, also a Stanford professor, made one of his courses, on machine learning, available free online, for which 100,000 people enrolled. Both courses ran for ten weeks. Mr Thrun’s was completed by 23,000 people; Mr Ng’s by 13,000.

Such online courses, with short video lectures, discussion boards for students and systems to grade their coursework automatically, became known as Massive Open Online Courses (MOOCs). In 2012 Mr Thrun founded an online-education startup called Udacity, and Mr Ng co-founded another, called Coursera. That same year Harvard University and the Massachusetts Institute of Technology got together to form edX, a non-profit MOOC provider, headed by Anant Agarwal, the head of MIT’s artificial-intelligence laboratory. Some thought that MOOCs would replace traditional university teaching. The initial hype around MOOCs has since died down somewhat (though millions of students have taken online courses of some kind). But the MOOC boom illustrated the enormous potential for delivering education online, in bite-sized chunks.

The fact that Udacity, Coursera and edX all emerged from AI labs highlights the conviction within the AI community that education systems need an overhaul. Mr Thrun says he founded Udacity as an “antidote to the ongoing AI revolution”, which will require workers to acquire new skills throughout their careers. Similarly, Mr Ng thinks that given the potential impact of their work on the labour market, AI researchers “have an ethical responsibility to step up and address the problems we cause”; Coursera, he says, is his contribution. Moreover, AI technology has great potential in education. “Adaptive learning”—software that tailors courses for each student individually, presenting concepts in the order he will find easiest to understand and enabling him to work at his own pace—has seemed to be just around the corner for years. But new machine-learning techniques might at last help it deliver on its promise.

More here.

Review: “Adults in the Room” by Yanis Varoufakis

One of the greatest political memoirs ever? The leftwing Greek economist and former minister of finance tells a startling story about his encounter with Europe’s ‘deep establishment’.

Paul Mason in The Guardian:

3500Yanis Varoufakis once bought me a gin and tonic. His wife once gave me a cup of tea. While dodging my questions, as finance ministers are obliged to, he never once told me an outright lie. And I’ve hosted him at two all-ticketed events. I list these transactions because of what I am about to say: that Varoufakis has written one of the greatest political memoirs of all time. It stands alongside Alan Clark’s for frankness, Denis Healey’s for attacks on former allies, and – as a manual for exploring the perils of statecraft – will probably gain the same stature as Robert Caro’s biography of Lyndon B Johnson.

Yet Varoufakis’s account of the crisis that has scarred Greece between 2010 and today also stands in a category of its own: it is the inside story of high politics told by an outsider. Varoufakis began on the outside – both of elite politics and the Greek far left – swerved to the inside, and then abruptly abandoned it, after he was sacked by his former ally, Greek prime minister Alexis Tsipras, in July 2015. He dramatises his intent throughout the crisis with a telling anecdote. He’s in Washington for a meeting with Larry Summers, the former US treasury secretary and Obama confidant. Summers asks him point blank: do you want to be on the inside or the outside? “Outsiders prioritise their freedom to speak their version of the truth. The price is that they are ignored by the insiders, who make the important decisions,” Summers warns.

More here.

Calculating Women

Despite the collaborative nature of science, for too much of its history the work of women and scientists of color was exploited and unacknowledged.

Priyamvada Natarajan in the New York Review of Books:

Natarajan_1-052517After a precisely calculated and perfectly executed voyage, the Mars Orbiter Mission reached its destination on September 24, 2014. The Indian Space Research Organisation, which oversaw the mission, had succeeded in doing what Russia, the United States, China, and Japan had failed to do: send an unmanned probe into orbit around Mars on the first attempt. The project’s success captured headlines worldwide, and a photograph of the cheering women on the administrative staff in the operations control room went viral on the Internet. Subsequently, articles about the female scientists and engineers who were central to the success of the project were widely published.

Perhaps never before had the participation of women in a space mission been so visible, even though women had been making fundamental computational contributions to astronomy and aeronautics for well over a century. Three recent books—Dava Sobel’s The Glass Universe, Margot Lee Shetterly’s Hidden Figures (which has also been turned into an Oscar-nominated film), and Nathalia Holt’s The Rise of the Rocket Girls—show some of what they accomplished.

In the late nineteenth century, the term “computer” referred not to a machine but to a person who took measurements, graphed data, and made calculations that helped interpret information and predict results. Although computing was considered mechanical and menial, it was a necessary task that required precision and patience. Before the invention of the modern digital computer, it was crucial to the advance of science and technology. Computers were often women, who could be paid less than men and could work during wartime. Despite the integral part they played in establishing the US as a leader in modern astrophysics and space exploration, their work has remained largely unknown.

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Why My Father Votes for Le Pen

Édouard Louis in the New York Times:

07louis-master768Last month, the face of Marine Le Pen appeared on my computer screen. The headline under the picture read, “Marine Le Pen in Round 2.” The leader of France’s far-right National Front, she had advanced to a runoff vote in the presidential election. I immediately thought of my father, a hundred miles away.

I imagined him bursting with joy in front of the TV — the same joy he felt in 2002 when Jean-Marie Le Pen, Marine Le Pen’s father and the previous leader of the National Front, also made it to the second round. I remembered my father shouting, “We’re going to win!” with tears in his eyes.

I grew up in Hallencourt, a tiny village in Northern France where, until the 1980s, nearly everyone worked for the same factory. By the time I was born, in the 1990s, after several waves of layoffs, most of the people around me were out of work and had to survive as best they could on welfare. My father left school at 14, as did his father before him. He worked for 10 years at the factory. He never got a chance to be laid off: One day at work, a storage container fell on him and crushed his back, leaving him bedridden, on morphine for the pain.

I knew the feeling of being hungry before I knew how to read. From the time I was 5 my father would order me to go down the street and knock on the door of one of my aunts to ask if she could spare some pasta or bread for our table.

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A letter to my daughter: What I want you to know about freedom, fear and Donald Trump

Claire Messud in Salon:

Dear Livia,

TrumpWhen you were seven weeks old, we took you to a wedding in New York City. We dressed you in an embroidered white linen dress I’d also worn as an infant, we combed what little hair you had, we popped you in the car seat and zoomed down from western Massachusetts. With the exception of the lovely bride, you were the belle of the ball — handed from aspiring grandmother to aspiring grandmother, chin-chucked, dandled, cooed over, cuddled. Daddy surreptitiously changed your diaper in the library of the fancy private club. A television star praised your dimples. You loved every minute and didn’t cry once. Two days later, less than twenty-four hours after we got home, al-Qaeda terrorists hijacked passenger jets and flew them into a field in rural Pennsylvania, the Pentagon, and the Twin Towers, killing thousands. The world into which we thought you had been born was ineradicably altered in a matter of hours. So began the terrible Time of Fear, the better part of a decade in which our actions and reactions as a nation were premised on constant dread and anxiety. We prosecuted wars on false pretenses; we blithely dispensed with our fundamental moral beliefs and turned a blind eye to extraordinary rendition and torture. With arrogant ignorance, inadequate military preparations, and botched strategies, we sacrificed countless young men and women, both on the battlefield and afterward, many of them victims of severe injuries whose lives can never be fully restored. We treated our allies in the region with cavalier indifference (remember Kirk Johnson, Daddy’s friend from Berlin, who started the List Project and worked so hard to help Iraqis abandoned by the American government for whom they’d worked?). In the course of these years, we alienated a generation of young people across the Middle East. When I visited Turkey in 2007 as a cultural guest of the State Department, it was explained to me that under Bill Clinton, the United States had had a more than 75 percent approval rating in Turkey. By the last years of George W. Bush’s presidency, that rating was 9 percent. And 50 percent of the Turkish population was under twenty-five years old, which meant that most young Turks had never thought well of our country.

In 2008, Barack Obama ran for president with the slogan “Yes We Can,” on a platform of “Hope.” You turned seven years old that year — the age of reason — and both at home and in the country, the optimism was palpable. Your friend Annie favored Hillary and dressed up as HRC for Halloween; you liked them both, Hillary and Obama, and didn’t mind who won. Even though you were still small, you laughed at Sarah Palin jokes — not realizing, I think, that they were funny only because she wasn’t elected. We believed that we could, as a nation, surmount our fear together. We believed in choosing peaceful dialogue instead of conflict; in openness and tolerance instead of division and hatred. We believed in a progressive future instead of a return to the past. These past eight years have not been without problems or limitations. But it has a been a gift for you — and for us, raising you — to grow to maturity in a political culture that supports equal rights, dignity, and mutual respect for all, that believes in global cooperation on important issues as diverse as climate change and world peace.

More here.

Saturday, May 6, 2017

KUMAIL NANJIANI’S CULTURE-CLASH COMEDY

His standup comedy and his new movie, “The Big Sick,” offer portrayals of secular Muslims that American audiences rarely see.

Andrew Marantz in The New Yorker:

170508_r29897-800In 2009, on the “Late Show with David Letterman,” the comedian Kumail Nanjiani walked onstage, wearing a boxy black suit and a cordless mike, to do a standup set. The band played a few bars of “Born in the U.S.A.,” an allusion, presumably, to the fact that he wasn’t. The first anecdote of Nanjiani’s set fell flat. He stood stiffly, swallowing hard, his hands clasped tightly in front of his chest. Then he told a joke about theme-park attractions with excessively convoluted backstories. “It’s like a story line to a porn movie,” he said. “I really don’t care what all your professions are. I’m just here for the ride.” It wasn’t the cleverest punch line in Nanjiani’s act, but it received a big laugh and a ten-second applause break. He exhaled audibly, relaxing his hands. His next bit was about the Cyclone, the rickety roller coaster on Coney Island. “The Cyclone was made in the year 1927! Let that sink in. They should change the name of that ride to 1927, ’cause that fact is way scarier than any cyclone,” he said. “And the whole thing is made of wood . . . you know, that indestructible substance that nasa uses for its space shuttles.” The bit could have been delivered in the nineteen-sixties, by Woody Allen or Mort Sahl, with one exception: Nanjiani said the ride was “the scariest experience of my life—and I grew up in Pakistan.”

Nanjiani spent his childhood in Karachi, Pakistan’s biggest city. In 1997, when he was nineteen, he left to attend Grinnell College, a small liberal-arts school in the middle of Iowa. “I thought, from watching TV and stuff, that America was one place,” he told me. “They only show you L.A. and New York. They don’t warn you about Iowa.” When he got to college, he says, “I was super shy, but I learned that my friends thought I was funny.” His senior year, there was an open mike on campus, and his friends urged him to try standup. He performed for thirty-five minutes. “I don’t think I’ve ever done better than that crowd, reaction-wise,” he said. “Of course, it was full of people who knew me. But it gave me an irrational amount of confidence.” After school, he moved to Chicago and started performing. Michael Showalter, a comedian and director who has admired Nanjiani from the beginning, told me, “Anyone who saw him saw how smart and fresh his voice was. The question wasn’t whether he’d be successful, only which direction he’d choose to go in.”

More here.

Hundreds of Psychology Studies are Wrong

James M. Sherlock in Psychology Today:

Sherlock photo2This might sound like nothing new if you’ve kept up with the replication crisis, but I’m referring to a completely different issue – one that is all too often overlooked.

Let me introduce the problem with an example. In a recent article from The Conversation, researchers from the University of Queensland describe a study in which they observed families during hospital visits and measured the anxiety and distress of both parents and children. Measures of children’s anxiety and pain were positively associated with parents’ distress levels. The researchers interpret the role of the parents’ distress during the visit as causal, arguing that parents who are more anxious and distressed are less able to support their child during the procedure. This seems like a rather sensible and intuitive conclusion to draw; however, the researchers should have absolutely no confidence in doing so.

Anxiety sensitivity (i.e. how susceptible an individual is to feeling anxious, ranging from completely normal to pathologically desensitise/hypersensitive) is substantially genetic. In fact, nearly half of the variation (i.e. the differences between people in the population) in anxiety sensitivity is likely to be genetic. The researchers therefore have no way to distinguish whether the children are responding to their parents’ distress or simply share their anxious disposition for genetic reasons, or more likely some combination of the two.

More here.

George Lakoff says, ‘Don’t underestimate Trump’

Daphne White in Berkeleyside:

George-Lakoff.-Photo-Daphne-White-1200x900George Lakoff, retired UC Berkeley professor and author of Don’t Think of an Elephant, is one of a very few people in Berkeley who does not underestimate Donald Trump. “Trump is not stupid,” he tells anyone who will listen. “He is a super salesman, and he knows how to change your brain and use it to his advantage.”

In fact, Lakoff predicted a year ago that Trump would win with 47% of the vote. (The actual total was 46%.) Lakoff even told Hillary Clinton’s campaign and PAC staffers how to counteract Trump’s message. But they couldn’t hear him.

As far back as 2006, Lakoff saw the writing on the wall. “A dark cloud of authoritarianism looms over the nation,” he wrote in his book Thinking Points, A Progressive’s Handbook. ”Radical conservatives have taken over the reins of government and have been controlling the terms of the political debate for many years.” The progressives couldn’t hear him, either.

Lakoff’s message is simple, but it is couched in the language of cognitive linguistics and neuroscience. The problem is that political candidates rely on pollsters and PR people, not linguists or neuroscientists. So when Lakoff repeatedly says that “voters don’t vote their self-interest, they vote their values,” progressive politicians continually ignore him. His ideas don’t fit in with their worldview, so they can’t hear him.

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How Machiavelli Trolled Europe’s Princes

Erica Benner in The Daily Beast:

MachIn the winter of 1538, an Englishman living in Italy travelled to Florence. Cardinal Reginald Pole was a devout adherent of the Church of Rome at a time when the English Reformation threatened to tear the Church apart. He had fled into self-imposed exile from his native shores after opposing King Henry VIII’s divorce from Catherine of Aragon, and settled in Italy. Along with his other business in Florence, Pole had a personal mission. About a decade before this journey, he’d had a conversation with Thomas Cromwell, a man of low origins who now served as the king’s most intimate counsellor. Cromwell had stopped at nothing—or so it seemed to Pole—to indulge Henry’s lusts and blasphemies. It was this ambitious adviser who, Pole believed, had masterminded the monarch’s divorce, put England in a state of war with the Church, had priests and noblemen murdered—and had always found some righteous pretext to color these deeds. Contemplating the evils that had driven him from his homeland, Pole longed to get his hands on a book about statecraft that Cromwell had praised when they’d met. The book’s author was a citizen of Florence. He had died over 10 years previously, so Pole could not meet him in person. But if the cardinal could read that book, it might help him better understand Cromwell’s mind and Henry’s actions, and thereby make sense of what was happening to his poor England. On acquiring a copy, Pole began to read with fascination, then with growing horror. “I had scarcely begun to read the book,” he later wrote, “when I recognized the finger of Satan, though it bore the name of a human author and was written in a discernibly human style.” The Florentine’s text laid bare all the doctrines that seemed to guide Cromwell’s policies. Princes, it said, should build their states on fear rather than love. Since they live in a world teeming with lies and violence, they have no choice but to practise duplicity. Indeed, the prince who best knows how to deceive will be the most successful. In short, Pole declared, the book Cromwell so admired is full of “things that stink of Satan’s every wickedness.” Its author is clearly “an enemy of the human race.” The book that so appalled Cardinal Pole was the Prince, and the name of its author Niccolò Machiavelli.

Aghast and intrigued, Pole was determined to find out more about the man who could write such things. Machiavelli, it transpired, had at one time caused a good deal of trouble for Florence’s own princely family, the Medici. In 1512, a year before Machiavelli wrote his most notorious work, the new Medici government had ejected him from the civil-service posts he’d held for nearly 15 years, then imprisoned and tortured him on suspicion of plotting to overthrow the principality. These fragments of biography must have come up when Pole asked his Florentine hosts about their compatriot. For, he wrote, when he told them his thoughts about the book, they excused the author, “answering the charge with the same argument that Machiavelli himself had offered when they had confronted him.”

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Platelets suppress T cell immunity against cancer

From Phy.Org:

PlateletssupBlood platelets help disguise cancer from the immune system by suppressing T cells, report scientists at the Medical University of South Carolina (MUSC) in the May 5, 2017 issue of Science Immunology. In extensive preclinical tests, a promising T cell therapy more successfully boosted immunity against melanoma when common antiplatelet drugs such as aspirin were added. Zihai Li, M.D., Ph.D., senior author on the article, is chair of the MUSC Department of Microbiology and Immunology, the program leader for the Cancer Immunology Research Program at MUSC Hollings Cancer Center, and the SmartState Sally Abney Rose Chair in Stem Cell Biology & Therapy. Li studies how tumors hide themselves from the immune system.

Li's team found that platelets release a molecule that suppresses the activity of cancer-fighting T cells. That molecule, unsurprisingly, was TGF-beta, which has been recognized for decades for its role in cancer growth. Yet this study is the first of its kind. Most TGF-beta is inactive. Li and his group found that the surface of platelets has a protein called GARP, a molecular hook that is uniquely able to trap and activate TGF-beta. Platelets, which are small cell fragments that circulate throughout the blood and are normally involved in clotting, become the major source of activated TGF-beta that invading tumor cells use to suppress T cells. In other words, platelets help give tumors their invisibility cloak from the immune system. Scientists have known for several years that certain cancers suppress T cells to avoid the immune system. That is why adoptive T cell therapy is one of the most promising advances in modern cancer treatment. It is a type of immunotherapy that awakens the immune system by retraining a patient's T cells to recognize their cancer. T cells are isolated from a patient's blood and retrained, or "primed," to recognize tumor cells. They are then injected back into the patient's bloodstream where they can now hunt and fight cancer.

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Friday, May 5, 2017

Vatican II gave carte blanche to architecture’s wild men

Notre_Dame_du_Haut(ws)Jonathan Meades at The Spectator:

The Catholic Church’s Second Vatican Council provides a salutary example of a tiny ‘elite’ foisting ‘anti-elitist’ practices on the ‘non-elite’ — and coming a cropper. Vatican II’s dates are important. The Council was convened in 1962 and concluded in December 1965. These were the high years of the most uncompromising architectural modernism and, just as pertinently, of the craze for theatre-in-the-round, whose champions considered the proscenium arch to be an authoritarian (very possibly ‘fascist’) instrument inimical to ‘participation’.

Rome’s neophilia left much of the clerisy bewildered. It was admitting temporal fashions to a spiritual domain. Maynooth’s head was spinning. The Council’s bias was towards the Liturgical Movement’s long-hatched plans for modernisation. Hence ecumenicism, the vernacular and often prosey mass, herding the flock close to the host in an act of naif literalism and turning the matey, guitar-strumming priest to face that congregation.

Then there was the matter of iconoclasm, which proved to be a further form of self-harm. Extant churches were ‘cleansed’, stripped of altars, stained glass, paintings and dubious bondieuserie. The result was occasionally akin to the marvellously frigid post-Reformation ecclesiastical interiors of Pieter Saenredam. More often, it was doctrinally sanctioned vandalism, with added carpets.

more here.