A Break in the Search for the Origin of Complex Life

Ed Yong in The Atlantic:

ScreenHunter_2520 Jan. 18 18.23In Norse mythology, humans and our world were created by a pantheon of gods who lived in the realm of Asgard. As it turns out, these stories have a grain of truth to them.

Thanks to a team of scientists led by Thijs Ettema, Asgard is now also the name of a large clan of microbes. Its members, which are named after Norse gods like Odin, Thor, Loki, and Heimdall, are found all over the world. Many of them are rare and no one has actually seen them under a microscope. But thanks to their DNA, we know they exist. And we know that they are singularly important to us, because they may well be the group from which we evolved.

If Ettema is right, then around two billion years ago, an Asgardian microbe (or an incredibly close relative) took part in a unique event that gave rise to the eukaryotes. That’s the group which includes humans, our fellow animals, plants, fungi, and every living thing made from large, complex cells—all the living things we’re most familiar with, and all the ones we can actually see. Our origins lie either in Asgard, or next door to it.

To understand this story, we have to go back to the very beginning.

More here.



FACTS AREN’T ENOUGH TO SAVE LIBERAL DEMOCRACY

Christopher Robichaud at the Niskanen Centre:

Lebowski-1131x320Facts these days are taking a beating in politics. A month or so back, Trump surrogate Scottie Nell Hughes shared on “The Diane Rehm Show” that “[t]here’s no such thing, unfortunately, anymore, as facts.” She was pilloried in the press over this, not unsurprisingly, though her words, taken at face value, do at least convey a sense of loss over our purported predicament—it’s unfortunate that there aren’t any facts anymore. Unfortunate or not, is she right that truth has left the building?

Well, no, of course not. We still have death and taxes, if nothing else, two stubborn, non-negotiable facts of modern life. And even if Republicans somehow manage to do away entirely with the latter in the first hundred days of Trump’s presidency, I’m pretty sure we’ll be stuck with our own mortality for at least a little while longer.

The really real world, in other words, didn’t suddenly slip away during the 2016 election cycle, impressions to the contrary notwithstanding. Be that as it may, it’s hard to deny that something funny is going on.

“Post-truth” was recently named the international word of the year by the Oxford English Dictionary. PolitiFact’s 2016 Lie of the Year is fake news—as in all of it. A few days before the election, the Toronto Star listed in excruciating detail 560 falsehoods that then-candidate Donald Trump had uttered during the election cycle, a project of mendacity so immense in scope and ambition that the Los Angeles Times, two months earlier, argued that it was unprecedented in modern presidential politics. When election day came around this November, the general consensus among pundits was that the American people would surely reject such an unapologetic liar.

And then Donald Trump was elected the forty-fifth President of the United States.

More here.

Our Quest for Knowledge

Morgan Meis and I drove to Switzerland (from Italy, where I live) to look at a painting in Basel that Morgan is writing about in a new book. On the way back, we hit a heavy snowstorm on the Swiss highways and I took some video footage. Then we made this arty short film from it. (The title is a joke: my wife was asked where we were and she sarcastically replied, "On one of their usual quests for knowledge!")

Video length: 7:52

In Bhutan, Happiness Index as Gauge for Social Ills

Kai Schultz in The New York Times:

BHUTAN-3-master675THIMPHU, Bhutan — As a downpour settled into a thick fog outside, Dasho Karma Ura let his eyes flicker at the ceiling of a wood-paneled conference room and began expounding on the nature of happiness. “People feel happy when they see something ethical,” he said. “When you think you have done something right and brave and courageous, when you can constantly recharge yourself as a meaningful actor.” “And lastly,” he added, thumbing Buddhist prayer beads, “something which makes you pause and think, ‘Ah, this is beautiful. Beautiful, meaningful, ethical.’ ”

Mr. Ura, 55, is perhaps one of the world’s leading experts on happiness, at least as seen through the lens of development economics. It has been something of a preoccupation for more than two decades as he has developed and fine-tuned Bhutan’s Gross National Happiness indicator, a supplementary, sometimes alternative, yardstick to the conventional measure of development, gross domestic product. As the president of the Center for Bhutan Studies and GNH Research, Mr. Ura has spent much of his time asking Bhutanese questions about interactions with neighbors, quality of sleep and physical vigor in an attempt to understand and measure subjective well-being. Over the years, he has watched the idea catch on far beyond Bhutan, a remote kingdom in the Himalayas. When Denmark repeatedly came in first on the World Happiness Report, which looks at the science of measuring quality of life, more people became aware of both the report, and the concept behind it. As nations struggle with what Mr. Ura called more “guns, bullets and bombs” than at any other time in history, he said it was imperative that many more countries devise indicators that look beyond economics.

More here.

How the panda’s ‘thumb’ evolved twice

Jane Qiu in Nature:

WEB_Composite_Panda-ThumbsGiant pandas and the distantly related red pandas may have independently evolved an extra ‘digit’ — a false thumb — through changes to the same genes. The two species share a common ancestor that lived more than 40 million years ago. Giant pandas (Ailuropoda melanoleuca) are distant relatives of other bears, whereas red pandas (Ailurus fulgens) are more closely related to ferrets. Both species subsist on a diet composed almost entirely of bamboo, with the help of a false digit. The pandas’ ‘thumbs’ — which are actually abnormally enlarged wrist bones — allow both species to grip and handle bamboo with remarkable dexterity. But “exactly how such evolutionarily distant animals evolved such a similar lifestyle and body form has long been a mystery,” says Steve Phelps, a geneticist at the University of Texas at Austin.

In a new study, Wei Fuwen and Hu Yibo, conservation geneticists at the Chinese Academy of Sciences’ Institute of Zoology in Beijing, and their colleagues, produced the first genome sequence of the red panda and compared it with the giant panda genome. This comparison turned up a list of 70 genes that showed signs of evolutionary change in both species. Two of the genes, DYNC2H1 and PCNT, are important for limb development, and mutations in these genes can cause bone and muscle abnormalities, including extra digits, in mice and humans. Both pandas also share single amino-acid changes in the proteins encoded by DYNC2H1 and PCNT that are not found in 60 other mammal species. The researchers propose that these changes could have contributed to the pandas’ false thumbs.

More here.

30 YEARS LATER, SCORSESE MAKES HIS SILENCE

SilencecoverNick Ripatrazone at Literary Hub:

In 1988, former altar boy Martin Scorsese said “I’m a believer, but I’m struggling.” His film The Last Temptation of Christ had just released to much criticism in Christian circles. One defender was the Reverend Paul Moore, the Episcopal Bishop of New York. In a letter to The New York Times, Moore praised Scorsese’s provocative representation of Christ, writing that much like the Spanish painters of the 16th and 17th centuries, Scorsese depicted Christ “as an agonized, suffering body on the cross.” Moore said he was “moved” by Scorsese’s film.

Moved enough to gift Scorsese with a book: Silence, a 1966 novel by Shūsaku Endō. The director would soon buy the film rights to the book, but “got sidetracked doing other films.” Yet Scorsese “was always going back to the book” because it gave him “a kind of sustenance that I have found in only a very few works of art.” Now, finally, the film has reached theaters—like a long withheld confession.

I can’t help but compare Scorsese’s gestation of the film with Gustave Flaubert’s The Temptation of Saint Anthony, finished in 1872 but started nearly 30 years earlier.

more here.

‘Guilty Thing: A Life of Thomas De Quincey’ By Frances Wilson

Guilty-thingus-199x300Levi Stahl at Open Letters Monthly:

The vast majority of writers leave no lasting posthumous trace. They die, and their work, successful as it may have been in its time, simply fades away. A lucky few—the Dickenses, Trollopes, Woolfs— end up firmly ensconced in the culture, their major works widely read, their minor ones remaining in print, and even their ephemera published. Then there’s the middle ground: the writers who are known for one or two pieces drawn from a vast body of work that is otherwise almost wholly forgotten.

Such a one is Thomas De Quincey, whose phantasmagoric memoir Confessions of an English Opium Eater has been handed from poets to trippers in an unbroken skein since the it was first published in 1822. De Quincey wrote many hundreds of thousands of words in addition toConfessions—the complete edition of his works prepared by a US publisher in his later years ran to twenty-two volumes—but it’s not inappropriate that Confessions is what he’s remembered by: opium was his regrettable lodestar, rivaled only, perhaps, by Wordsworth. But whereas he soured on Wordsworth and moved beyond him, opium kept him in its grip for a lifetime.

“Opium was the making of De Quincey,” writes Frances Wilson in Guilty Thing, her absorbing new biography.

more here.

The Song of John Berger

John-berger-bressonBen Ratliff at the NYRB:

A good way to come at John Berger (1926-2017) is to do it by mistake or serendipity, to discover him in the wrong box. At least that was my story, as a music critic who never studied art. Individual, unmanaged, unmediated discovery, an outsider’s discovery, probably suits him best. Not the kind that happens in a curriculum. He didn’t like school!

He has a reputation for appealing to the young, though I’m glad I came to him late. Subsequently I have taught Berger’s work to young critics. It hasn’t always gone well. It takes time to get it right. No single essay or book defines him. Some see him as digressive or humorless—the sort of guy who in the Fifties would lead a review of a show by Henry Moore, his former teacher, in this way: “The development of Henry Moore’s sculpture is a tragic example of how the half-truths on which so much Modern Art has been based eventually lead to sterility and—in terms of appreciation—mass self-deception.” Or, in the Seventies, the sort of guy who would address the tacit power-politics of the zoo (in “Why Look at Animals?”), but not without dilating first on Rousseau, Homer, and Descartes.

But at other times, especially during the Eighties and after, he could write about art in the form of intimate speech but with total clonking certainty, as if to suggest that collaborative thoughts about a painting, or any human achievement really—not with another critic or some kind of licensed expert but with your spouse or child or friend—were the most significant thoughts you could have.

more here.

Tuesday, January 17, 2017

Linguist George Lakoff explains how the Democrats helped elect Trump

Paul Rosenberg in Salon:

ScreenHunter_2519 Jan. 17 20.17George Lakoff didn’t start off in the world of politics. He was a founding father of cognitive linguistics, starting with his 1980 book, “Metaphors We Live By (co-authored with philosopher Mark Johnson). The book showed how immediate, concrete experience — bodily orientation, physical movement, and so on — structures our understanding of more complex and abstract experiences via “conceptual metaphors” such as “Consciousness Is Up,” “Love Is a Journey,” etc.

Facing the rise of Newt Gingrich in the 1990s and bewildered by how he and other liberals could not make logical sense of conservative ideology (what do gun rights, low taxes and banning abortion have in common?), Lakoff found an answer in conceptual metaphors derived form two contrasting family models explicated by Diana Baumrind as authoritarian (“strict father” in Lakoff’s terms) and authoritative (“nurturant parent”), as described in his 1996 book, “Moral Politics.” His 2004 book, “Don’t Think of an Elephant: Know Your Values and Frame the Debate,” drew on a wider range of cognitive science and gained a mass audience, but failed to fundamentally change how liberals and Democrats approach politics, as was richly illustrated by the recent election of Donald Trump.

But Lakoff is nothing if not persistent, and has penned an election postmortem like no other, “A Minority President: Why the Polls Failed, and What the Majority Can Do.” It rearticulates the arguments of his earlier books — including others like “The Political Mind,” Whose Freedom?“ and Philosophy in the Flesh — along with fresh analysis and new insights that push hard for opening up a new realm of possibilities, instead of retrenching, retreating or repeating strategies and tactics that have failed in the past. In it, Lakoff displays both an intimate familiarity with detailed examples and a broad-based visionary outlook.

More here.

The Pope of Physics: Enrico Fermi and the Birth of the Atomic Age

Jeremy Bernstein in Inference Review:

512FB9hFmJL._SY344_BO1,204,203,200_Enrico Fermi came to Harvard to give the Loeb Lectures in the fall of 1953. I was eager to meet him. I admired his work, of course, but I also thought there might be a distant family connection between us. My aunt had given me the impression that after Fermi’s arrival in the United States in 1939, she and members of the Fermi family had become the best of friends. When I ran into Fermi in the hallway of the Harvard physics building, I mentioned my aunt. Fermi gave me a chilly stare, and, without saying a word, walked away. Some years later, I described this encounter to someone who knew Fermi very well. He was not surprised.

During his visit, Fermi was persuaded to give an informal talk to a journal club formed under the guidance of Roy Glauber. Then a young assistant professor, Glauber would later win a Nobel Prize. He had gotten to know Fermi at Los Alamos during the war. I had hoped that Fermi would discuss the meson experiments being conducted at the University of Chicago. His talk went no further than describing an elementary problem in quantum theory. Most of us could have given the same lecture. With the exception of Paul Martin, we remained silent. Martin was the most brilliant of the graduate students; he objected to the approximations Fermi had made. Fermi gave a second lecture. Martin was still not satisfied. And a third. At that point, Martin gave up. Fermi would have continued until he had beaten Martin into submission.

Non simpatico.

The Pope of Physics is an account of Fermi’s life and times. Gino Segrè and his wife, Bettina Hoerlin, have written their account from the inside out; they knew a good many people who knew Fermi. Hoerlin’s father, Herman Hoerlin, worked with Fermi at Los Alamos, and Segrè’s uncle, Emilio Segrè, had been one of Fermi’s original collaborators in Rome. Both Segrè and Hoerlin could regard Fermi as a familiar presence.

More here.

In Pakistan, Justice for the Killers Among Us

Mohammed Hanif in the New York Times:

ScreenHunter_2518 Jan. 17 16.48The army chief of Pakistan recently confirmed the death sentence of Saad Aziz, a business-school graduate and restaurant manager who was convicted of killing my friend Sabeen Mahmud. Sabeen, who was 40 then, ran The Second Floor in Karachi, a cafe where many writers and artists, including me, got their first break. It was also a hub for activists advocating controversial, often lost, causes. She was shot dead on April 24, 2015, minutes after a talk she had organized about the disappearance of Baloch activists, allegedly at the hand of Pakistan’s military intelligence agencies.

Chances are that after the requisite technical appeals to higher courts and a plea for mercy to the president of Pakistan, Aziz will hang. There are even stronger chances that we’ll never know for sure why he killed Sabeen.

Aziz was sentenced to death by a military court last May. The media weren’t allowed to cover the trial. There is no detailed judgment. We’ll never get to hear what Aziz may have said in his defense or about his motives.

Was he a lone killer, or acting on someone’s behalf? Was Sabeen killed for taking a stand against the Pakistani Taliban and their supporters in the mainstream? For defying the powerful military establishment? Because she insisted on drawing red hearts on walls around the city to mark Valentine’s Day?

More here.

HOW KIRK FRANKLIN IS PUSHING THE BOUNDARIES OF GOSPEL

170116_r29293-320x429-1483726799Vinson Cunningham at The New Yorker:

It’s hard to describe in a word what Kirk Franklin does for a living. Franklin, forty-six, is the most successful contemporary gospel artist of his generation, but he isn’t a singer. He plays the piano, but only intermittently onstage, more to contribute to the pageantry than to show off his modest chops. Above all, he is a songwriter, but in performance and on his albums his role more closely resembles that of a stock character in hip-hop: the hype man. The best hype men—Flavor Flav, Spliff Star, the early Sean (P. Diddy) Combs—hop around onstage, slightly behind and to the side of the lead m.c., addressing the microphone in order to ad-lib or to reinforce punch lines as they rumble by. But a hype man is, by definition, a sidekick, and while most of the sound in Franklin’s music comes from elsewhere—usually, a band and an ensemble of singers—he is always and unquestionably the locus of its energy and intention.

When I first saw Franklin perform live, last spring, at the newly renovated Kings Theatre in Brooklyn, he stood at center stage, spotlit, rasping out preachy interjections whenever his singers paused for breath. The theatre had the grandeur of a cathedral: blood-red velvet curtains framed the stage; golden ceilings, patterned with blue-and-purple paisleys, soared over vaudeville-era balconies and plush seats. During “I Smile,” a bouncy, piano-propelled anthem to joyful resilience against life’s troubles, Franklin punctuated the chorus with a rhythmic series of shouts: “I smile”—“Yes!”—“Even though I’m hurt, see, I smile”—“Come on!”—“Even though I’ve been here for a while”—“Hallelujah!”—“I smile.”

more here.

My summer as a military propagandist in Iraq

UrlWillem Marx at Harper's Magazine:

I was flown across the Atlantic to meet my new employers. In downtown Washington, I was surprised by the ubiquity of fresh-faced young men, their blue short-sleeved buttondowns tucked neatly into khakis. Lincoln Group had its headquarters above an Indian grocery on K Street; a small placard in the building’s foyer read: VISITORS TO LINCOLN GROUP/ IRAQEX, 10TH FLOOR, SHOULD BE ANNOUNCED IN ADVANCE. On the tenth floor, electricians wired lights in some rooms while in others suited men conferenced behind glass walls. The company’s head of human resources, who had only just been hired herself, told me with a weary smile that things had been crazy lately.

Paige Craig popped in to see me as I filled out work papers in a tiny waiting room. Shaking my hand with a mighty grip, he uttered something to the effect of “welcome aboard.” He was very well built, with short, tidy hair and the tight khaki trousers and shirt of a military man. As he strode away, he seemed purposeful. Bailey, by contrast, was baby-faced and slight, his sandy-brown hair cut in a Bill Gates bob. In his comer office, we chatted about Oxford. He had studied economics and management at Lincoln College. When I asked whether his college had inspired the company’s new name, he shrugged. “Partly,” he said cryptically. He did say that Lincoln Group was rapidly expanding and that it offered incredible opportunities for bright young people like me: stock options were available to employees after just three months, and I might consider staying on after the summer. Christian Bailey hadn’t yet been to Iraq himself. Although he had planned numerous trips, he said, something always came up that kept him in D.C.

more here.

Theater: Why I Hate the Theater

3e0adab4ca87c27d85e7bcbd70408a77Javier Marías at Threepenny Review:

The biggest problem for me is that the theater of the age I live in has almost always tried to be “innovative” and “modern.” And that supposed innovation and modernity often consists in such infelicities as these: if it’s a classic work, you almost never see that work, but a version, adaptation, or recreation by some sly contemporary who thus pockets all the money, given that Sophocles, Shakespeare, Lope de Vega, Molière, Goldoni, and other such luminaries are all out of copyright. These adaptations generally involve the destruction of the classic work: some dispense with verse, if there is any; others dress Julius Caesar, Mark Antony, and Brutus in suit and tie, or as Nazi bigwigs, or have them run around naked throughout the entire play (although there is also a fashion for dressing everyone in a kind of hideous sack, so that they all look the same); there are those who prefer to have the characters prancing around a completely bare stage, screaming loudly, or on a stage equipped with a ramp or a tent or a net they can dangle from. Actors are usually told to be either “very natural” or “very artificial,” but the result is always the same, namely, their complete inability to speak the words audibly and in a way that captures the interest of the audience, who end up being so distracted by the actors’ howls, phoney pauses, incomprehensible songs or litanies, and imperfect diction (as well as looking to their own protection, because actors often hurl water or even fireworks into the audience) that they take little notice of what the actors are trying to communicate verbally. In the theater nowadays, it’s almost impossible, regardless of whether it’s relevant or not, to escape (a) hysterical, meaningless dancing, perhaps so that the audience can enjoy some “physical movement”; (b) a more or less “savage” or vaguely medieval scene, along the lines of some kind of revelry or peasant hoedown, or a lynching perhaps, or a gang rape, or a bit of group cannibalism—and whichever option they choose, none of them impresses or seems remotely believable; (c) somersaults, pirouettes, and juggling with a bit of mime thrown in, and there’s nothing I loathe more than mime and juggling (no need, I hope, to explain why).

more here.

Physician Aid in Dying Gains Acceptance in the U.S.

Paula Span in The New York Times:

SpanJudith Katherine Dunning had been waiting anxiously for California to adopt legislation that would make it legal for her to end her life. The cancer in her brain was progressing despite several rounds of treatment. At 68, she spent most of her day asleep and needed an aide to help with basic tasks. More centrally, Ms. Dunning — who, poignantly, had worked as an oral historian in Berkeley, Calif. — was losing her ability to speak. Even before the End of Life Option Act became law, in October 2015, she had recorded a video expressing her desire to hasten her death. The video, she hoped, would make her wishes clear, in case there were any doubts later on. “She felt she had completed all the important tasks of her life,” recalled her physician, Dr. Michael Rabow, director of the symptom management service at the University of California, San Francisco. “When she could no longer communicate, life was no longer worth living.”

In recent months, this option has become available to a growing number of Americans. Last June, aid-in-dying legislation took effect in California, the most populous state. In November, Colorado voters approved a ballot measure by nearly a two-thirds majority. The District of Columbia Council has passed a similar law, and the mayor quietly signed it last month. Aid in dying was already legal in Washington, Vermont, Montana and Oregon. So even if the District of Columbia’s law is blocked, as a prominent Republican representative has threatened to do, the country has arrived at a remarkable moment: Close to 20 percent of Americans live in jurisdictions where adults can legally end their lives if they are terminally ill and meet eligibility requirements. The laws, all based on the Death With Dignity Act Oregon adopted in 1997, allow physicians to write prescriptions for lethal drugs when patients qualify. The somewhat complicated procedure involves two oral requests and a written one, extensive discussions, and approval by two physicians. Patients must have the mental capacity to make medical decisions.

More here.

Monday, January 16, 2017

Sunday, January 15, 2017

Kareem Abdul-Jabbar on Two Books About Muslim Identity

Kareem Abdul-Jabbar in the New York Times:

ScreenHunter_2515 Jan. 15 20.03In 1776, Thomas Jefferson’s friend Senator Richard Henry Lee expressed both of their opinions when he asserted in Congress, referring to Muslims and Hindus, that “true freedom embraces the Mahometan and the Gentoo as well as the Christian religion.” In 1777, the Muslim kingdom of Morocco became the first country in the world to formally accept the United States as a sovereign nation. In 1786, when the United States needed protection from North African pirates who were stealing ships and enslaving crews, it signed the Treaty of Tripoli, which stated that “the government of the United States of America is not, in any sense, founded on the Christian religion, as it has in itself no character of enmity against the laws, religion or tranquillity of Musselmen.” In 1785, George Washington declared that he would welcome Muslim workers at Mount Vernon. In 1786, Jefferson triumphed in his Bill for Establishing Religious Freedom in Virginia, by persuading the Legislature to overwhelmingly reject attempts to include Jesus Christ as the religious authority in the bill. Jefferson later declared that this was one of his three greatest accomplishments.

Clearly, some of our founding fathers were very comfortable extending religious freedom to include Islam. They should have been. Islam didn’t just show up in America one day like an excited tourist. America imported it when we brought slaves over from Africa, an estimated 20 percent of whom were Muslim.

More here.

The many tragedies of Edward Teller

Ashutosh Jogalekar in The Curious Wavefunction:

587px-TellerEdward Teller was born on this day 107 years ago. Teller is best known to the general public for two things: his reputation as the “father of the hydrogen bomb” and as a key villain in the story of the downfall of Robert Oppenheimer. To me Teller will always be a prime example of the harm that brilliant men can do – either by accident or design – when they are placed in positions of power; as the famed historian Richard Rhodes said about Teller in an interview, “Teller consistently gave bad advice to every president that he worked for”. It’s a phenomenon that is a mainstay of politics but Teller’s case sadly indicates that even science can be put into the service of such misuse of power.
Ironically it is the two most publicly known facts about Teller that are also probably not entirely accurate. Later in life he often complained that the public had exaggerated his roles in both the hydrogen bomb program and in the ousting of Oppenheimer, and this contention was largely true. In truth he deserved both less credit and less blame for his two major acts. Without Teller hydrogen bombs would still have been developed and without Teller Oppenheimer would still have been removed from his role as the government’s foremost scientific advisor.
The question that continues to dog historians and scientists is simple; why did Teller behave the way he did?
More here.