The Search for Genes Leads to Unexpected Places

Carl Zimmer in The New York Times:

Genes Edward M. Marcotte is looking for drugs that can kill tumors by stopping blood vessel growth, and he and his colleagues at the University of Texas at Austin recently found some good targets — five human genes that are essential for that growth. Now they’re hunting for drugs that can stop those genes from working. Strangely, though, Dr. Marcotte did not discover the new genes in the human genome, nor in lab mice or even fruit flies. He and his colleagues found the genes in yeast. “On the face of it, it’s just crazy,” Dr. Marcotte said. After all, these single-cell fungi don’t make blood vessels. They don’t even make blood. In yeast, it turns out, these five genes work together on a completely unrelated task: fixing cell walls. Crazier still, Dr. Marcotte and his colleagues have discovered hundreds of other genes involved in human disorders by looking at distantly related species. They have found genes associated with deafness in plants, for example, and genes associated with breast cancer in nematode worms. The researchers reported their results recently in The Proceedings of the National Academy of Sciences.

The scientists took advantage of a peculiar feature of our evolutionary history. In our distant, amoeba-like ancestors, clusters of genes were already forming to work together on building cell walls and on other very basic tasks essential to life. Many of those genes still work together in those same clusters, over a billion years later, but on different tasks in different organisms. Studies like this offer a new twist on Charles Darwin’s original ideas about evolution. Anatomists in the mid-1800s were fascinated by the underlying similarities of traits in different species — the fact that a bat’s wing, for example, has all the same parts as a human hand. Darwin argued that this kind of similarity — known as homology — was just a matter of genealogy. Bats and humans share a common ancestor, and thus they inherited limbs with five digits.

More here.



Maybe America doesn’t want an immobilized judicial branch

Dahlia Lithwick in Slate:

ScreenHunter_03 Apr. 27 10.46 The public conversation about the judiciary in recent decades has often conflated a broad fear of unelected judges with a clear definition of what judges should do. In the wake of the Jackson Pollock-style jurisprudence of the Warren Court, anxiety about overreaching judges morphed into a widespread sense that judges simply do too much. Conservative groups happily pushed the line that liberal judges were all merely unelected “activists” bent on “legislating from the bench.” But this says little about how a judge should decide cases and much about our fear of the bench. Originalism and textualism aren't the only way to constrain judges, but they dovetail nicely with the idea that if you confine yourself to what the framers would want, you can't make as much of a mess with the yellow paint.

That's how judicial “activism”—a word we all should acknowledge is meaningless—turned into a catchall term for judges who did anything one didn't like. They were, after all, acting. It's only in recent years that we've discovered that the opposite of an “activist” judge is, in fact, a deceased one.

When John Roberts captured the hearts of America during his confirmation hearing, with his language of “minimalism” and “humility” and “restraint,” he brilliantly reassured Americans that at his very best, he would do just about nothing from the bench.

More here.

The Pope, the Church, and skepticism

Phil Plait in Bad Astronomy:

Ratzinger Let me be as clear as I can here: if Pope Ratzinger in any way stalled or prevented an investigation, Church-based or otherwise, into any aspect of child molestation by priests, then he needs to be indicted and brought to trial; an international tribunal into all this is also necessary and should be demanded by every living human on the planet. Obviously, a very thorough and major investigation of the Catholic Church’s practices about this needs to be held. It is a rock solid fact that there are a lot of priests who have molested children, and it’s clear that the Church has engaged in diversionary tactics ever since this became public (like the abhorrent Cardinal Tarcisio Bertone who says homosexuality lies at the heart of this scandal).

The skeptic community has been up in arms about this, as one would expect, since organized religion is a major target of skeptical thinkers. There have been rumors and misinformation about all this, including a dumb article (one of Rupert Murdoch’s papers, natch) that said that Richard Dawkins and Christopher Hitchens — both noted skeptics and atheists — were going to try to arrest the Pope if he visited England. This has been debunked by Dawkins himself.

But the idea of Dawkins swooping in to arrest the Pope got a lot of people fired up, notably in the skeptic community. A lot of folks have sounded off about what the skeptic community should do about this as individuals, as organized groups, and as a whole.

But the ideas being tossed around, to me, are a bit confused. The bottom line is, what role does the skeptic movement, such as it is, have in all this?

More here.

At least we are not Dubai

George Fulton in The Express Tribune:

ScreenHunter_02 Apr. 27 10.06 We haven’t got a lot to be thankful for these days in Pakistan.

But at least we are not Dubai.

Fed up with loadshedding, bombs, and TV cynicism pervading Pakistan, I recently escaped to Dubai for a holiday. Big mistake. Huge. Ten days later I returned, gasping for Karachi’s polluted, but far sweeter, air. Dubai may have the world’s tallest building and the world’s largest shopping mall, but it also has the world’s tiniest soul. It’s a plastic city built in steel and glass.

It has imported all the worst aspects of western culture (excessive consumption, environmental defilement) without importing any of its benefits (democracy, art). This is a city designed for instant gratification a hedonistic paradise for gluttons to indulge in fast food, fast living and fast women. It’s Las Vegas in a dish dash. You want to eat a gold leaf date? Munch away.

You want to drink a Dhs 3,000 bottle of champagne? Bottoms up. You want a UN selection of hookers at your fingertips? Tres bien. Let’s start with the malls. These cathedrals of capitalism, these mosques of materialism are mausoleums of the living dead. Slack jawed zombies roam around consuming food, clothes and electronics in a desperate attempt to fill the emptiness of their existence.

More here. [Thanks to Ali Altaf.]

Monday, April 26, 2010

Great Contemporary Fiction: Why Jews are Hot

by Bliss Kern

Novels Everyone knows that too many novels are published each year. I've read that one is released about every hour, which leaves even the fastest and most dedicated reader woefully unable to keep up with the market. One consequence of this deluge of words has been the development of a range of services targeted at letting each reader sift through the vast list of titles to find those must appreciated by others like them: Amazon comments; virtual, physical, and TV book clubs; Shelfari; endless new book review blogs, written by professionals and amateurs alike. By necessity, every reader has become an advocate, choosing novels we love and recommending them to others so that the stories that impressed us don't get lost in the textual flood. This constant need to listen to others to find our new favorites and to regularly champion them to others compels self-consciousness about our own literary tastes. I can now reel off a list of twelve of my favorite works of contemporary fiction without even thinking because their names are a cultural currency, invoked in all kinds of exchanges. I am of course not the only one. I recognize this habit in my friends and colleagues as well. While looking for common ground among us I have noticed an interesting phenomenon: a disproportionate number of the contemporary novelists about whom my demographic (urban, young thirties, educated) are excited are Jewish American. Is there some common thread among these texts that speaks to us? A new trend has developed in Jewish American fiction, one that holds out the universally tantalizing hope of integrating all of our complex cultural inputs into a single functional, even exciting, individual. Recent Jewish fiction has hit on the ability to describe exactly what it feels like to be that mythic creature: a modern American.

Read more »

The Man in the BMW

By Namit Arora

(An excerpt from a novel in progress.)

WomanOn their way to China Town, they pass an area with red curtained massage parlors and hookers pacing the streets. They stop at a red light behind a BMW. A hooker approaches its curbside window, talks to the driver, and hops in. Ved notices Liz shaking her head in what appears to be disapproval.

‘Consenting adults!’ he reminds her.

‘You don’t need to tell me that,’ she says sharply.

‘Why the disapproval then?’

‘Because it is so sad. I just wish these women had other options.’

‘Maybe they do. Are they doing this against their will here in San Francisco?’

‘Just because they do this, quote-unquote, voluntarily, doesn’t mean they do it because they are happy to. It’s because they don’t recognize, or lack, other options. Or they are addicted to abuse, or full of self-loathing and given to self-destruction.’ Her voice bristles as she continues, ‘It doesn’t mean they like it, or choose it with a healthy frame of mind.’

‘But if they do it voluntarily—so let’s exclude the drug addicts—can we say we know better? Who should be allowed to save people from themselves? So many others don’t like their jobs either, or choose them with a healthy frame of mind. I have met …’

She sighs. ‘I know that line of reasoning, but taking a job flipping burgers is not quite comparable to letting a horny customer finger your private parts.’

Read more »

Unceasing fascination with Japan, immersion in literary culture and the pleasures and sorrows of the “thrown” life: Colin Marshall talks to writer, translator, filmmaker and teacher John Nathan

John Nathan is the Takashima Professor of Japanese Cultural Studies at the University of California, Santa Barbara. Having relocated from the United States to Japan in the early 1960s to enroll as the first American regular student at the University of Tokyo, he became the translator of novels by such Japanese literary luminaries as Kenzaburo Oe and Yukio Mishima as well as a documentarian who revealed unseen corners of Japanese private life to America. He went on to write books on Mishima, the Sony corporation and Japan itself. His latest book is a memoir, Living Carelessly in Tokyo and Elsewhere. Colin Marshall originally conducted this conversation on the public radio program and podcast The Marketplace of Ideas. [MP3 part one] [MP3 part two] [iTunes link]

Nathan1 I was thinking about the idea of what I call “Japanophilia”, the affinity for, the attraction to, things Japanese. It seems like more the rule than the exception with modern kids in America. When you got into Japan — this was the early sixties — how common was it?

Not particularly. As a matter of fact, that's probably one of the reasons I was drawn to it so powerfully. It was really like, as I said in my book, having a pet monkey. Lots of kids studying Albert Camus, this, that and the other thing, Western philosophy and so on, but almost no one was studying or particularly interested in Japan in those days.

Was it that case that — you say this in your book — just seeing one character drawn was what led you into this whole life?

In an earlier draft of my memoir, I had written the truth about that: I set that story down with as much panache as I could manage, then I said, “Is that really what happened? I wonder if it is.” I've told the story fifty times, and now that I actually write it on the page, I question it.

Like so much in a memoir — which is really not so much about memory as it is about persona, it turns out when you actually write one — I think that's what happened. But it may be embellishment, to be honest with you. Certainly these two characters I do remember being drawn for me on a napkin by a Japanese kid who had come to Harvard.

It was a very unusual word. This word in English is “whitlow,” an infection beneath the finger- and toenails. I do think, at some point very early on, I stared at these two… pictures, basically, and thought to myself, “My god, these two things mean that? In that case, I want to learn more about this language.” I think there's some truth in that. Whether that's the only thing that impelled me to go check out a Japanese language class I couldn't say.
Read more »

My Life As A Crime Fighter: Absolute Prosecutorial Discretion – Part 2

by Norman Costa

Note: This narrative was created from three true stories. Each character is a combination of more than one real person. I changed names and story elements to preserve the privacy of individuals.

Part 1 of this story can be found HERE.

Alabama_state_flag

The story so far

My nephew, Samuel Anders, was arrested, at gun point, on a charge of domestic violence. His wife, Kara Thrace, called 911 after she was pushed by Samuel and fell over a chair. The 911 dispatcher asked if there was a firearm in the house. She answered, “Yes,” but didn't say that the pistol was hers, and that Samuel did not know where she hid it, under lock and key. The introduction of a firearm into this situation resulted in six police cars and a dozen officers surrounding the house and calling for Samuel to come out with his hands raised in the air.

Samuel was going to plead guilty, enroll in an anger management class, get counseling, be placed on probation for a year, and pay a fine. He called me to borrow $550 for his fine. When he described the events to me, it was clear he committed no crime. Kara overreacted to Samuel's leaving the house to avoid an argument with her. She ran up to him, blocked his exit, and thrust herself in his face while shouting insults. Samuel, reacting involuntarily and instinctively, threw up his hands. Kara was unhurt, locked herself in her bedroom, and called the police.

Following Samuel's release from jail, Kara went to the Assistant County Attorney, Cassandra Misandre, and asked that the charges be dropped. Kara explained she overreacted. She told of being emotionally distraught over her sister's death, she was depressed, and had been in severe pain from an anal fissure, for three weeks, at the time of the pushing incident. Misandre would not drop the charges.

I found a lawyer for Samuel and told him I would take care of all the legal bills. I retained Huntsville, Alabama attorney John Hunt “Thunderbolt” Morgan.

Read more »

Monday Poem

Song Behind a Rear-Tined Tiller

They believed consciousness resided in the heart

Aristotle believed this, and the Egyptians
who scooped out dead Pharaoh's brain
through his nose with a spoon
and stuffed his skull with rags assuring
he would not be thinking in the other world
to which he'd travel by long boat
being wrapped in cloth, speechless, supine in gold,
embarked with a breathless retinue of slaves
through the hole at the end of the earth
to a place far in imagination

Here and now the sun climbs a trellis of trees
along a rail line on which, at irregular intervals,
a freight comes dragging coal behind three engines
or hauls ladened boxcars labeled J.B. Hunt,
or pulls chains of chemical tanks and steel containers
heavy with the inventions of consciousness
some inscribed with graffiti sprayed by
a deft hand in letters bold and color-nuanced
arranged with a master's touch
tuned to the songs of heart or brain
while the smell of blue-grey diesel
sparks a synapse between beats
and one step follows another
behind a rear-tined tiller
as I urge a throttle

Who knows who sings
through what instrument
–did Aristotle?

by Jim Culleny, 4/22/10

The Kiss

Airvideos

By Maniza Naqvi

A puck planted on the right ear a pucch pressed in on the left. The sound still explosive in my head, I close my eyes as the full body search begins.

Arms stretched, legs apart, I assume the first step for the warrior pose. And now there lodged behind my eyes like an invisible stowaway Beyla’s kiss rings like a needling alarm, like a drill which draws a sharpened line, splitting my mind. Beyla’s bangles, white from wrist to shoulder, still jangle in my memory. I remember the sight of her skin cracked by searing sun as though it were ancient parchment covered in scripture and stretched over her bones: x-ray thin.

Stand still I am told. I shield myself inside that memory of bright sunlight, and shades of yellow, indigo, magenta and burnt earth. The kiss in my head undistilled, a discomfiting disturbance still. I think as I drift away: It’s a slim word. Still, a strong word. A good word. Even so. Even now. Quiet. Calm. Serene. Motion less. Breeze less. Yet. And so. Continuing. Continues.

Now, at the scanner machines I watch as the stuff sorter in a private security uniform wearing translucent disposable gloves, fishes out of my large handbag, a travel alarm clock, batteries, earphones tangled in so many keys— car, apartment and to the mailbox full of bills. An earring and a sheaf of papers appear next. A frangipani blossom, still moist, pressed inside a small black notebook flops out. There is a Spanish fan. She opens the fan, with both hands, unfurls it using her thumbs and sets it aside—painted geese against a dark blue sky—like the ones visiting Karachi from the frozen Siberia every winter. On the handle Espana painted in golden letters. A made in China, fan. I reach for the fan to show her how it’s done, the ratatat sudden sound of the unfurling, instant, with just one flick of my wrist—a trick I learned long ago in Manila, inflicts, in her, fear. Startled, she stops me—though I am done, “Don’t touch anything!” All I own—off limits to me, now weapons under her scrutiny and prying fingers—till she has judged them as benign; till her opinion has sterilized them; made them permissible to go on; all my stuff cleansed by a cleared and approved approver, till the next check point. She clucks her disapproval at the blossom—separates it out for disposal in a large trash bin which reminds me of the delete symbol on my email. In all this I give my head a vigorous shake, hoping to discard the ringing but it clings in there, undetected. She plucks up the imam zamin.

Read more »

Sunday, April 25, 2010

Anderson’s Amphibologies: On Perry Anderson

1270737547-largeMark Mazower in The Nation:

As a student during the 1980s, I gave the “European Union” section in the library a wide berth. The pall of soporific technocracy that hung over it made the adjacent shelves of books on law and political science enticing by comparison. A lot more has been written on the EU since then, most of it perpetuating that same “mortal dullness,” to borrow a phrase from the historian Perry Anderson. Dullness, on the other hand, is one charge no one has ever levied at Anderson, whose new book, The New Old World, is as insightful, combative and invigorating as its illustrious predecessors. Given Anderson's long and intimate engagement with Europe, both as an editor of the New Left Review and a regular contributor to the London Review of Books for the past two decades, one looks forward to what one gets–a bracing assault from somewhere on the left on the conventional Europieties, and new perspectives on the evolution, and likely future trajectory, of one of the most important political and cultural experiments of our time.

Anderson states the fundamental analytical difficulty of his project at the outset. Europe appears to be an “impossible object,” constantly slipping among three quite distinct literatures. There are histories of the postwar continent, mostly written in the shadow of the cold war and paying little attention to the European Union; there is the vast outpouring of works, popular and scholarly, focusing not on Europe per se but on this or that European country. (The EU may be a polity of sorts, but the political and intellectual energies of most Europeans still flow at the national level.) Finally, there is what we might call professional EUrology: a series of interventions, chiefly by legal scholars and political scientists, on the technicalities of the integration process and its institutions. Given the amnesiac quality of much of this last in particular, Anderson's ability to move fluently among the three literatures, and above all to evaluate the EU as an ideology, is necessary and timely.

Anderson takes as his starting point a series of reflections on the work of the historian Alan Milward, who in The Reconstruction of Western Europe, 1945-51 (1984), The European Rescue of the Nation-State (1992) and The Frontiers of National Sovereignty (1993) demonstrated the degree to which the politics of the nation-state remained vital in explaining the postwar drive toward European integration.

Christopher Hitchens re-reads Animal Farm

Animal-Farm-001 In the Guardian:

Like much of his later work – most conspicuously the much grimmer Nineteen Eighty-Four – Animal Farm was the product of Orwell's engagement in the Spanish civil war. During the course of that conflict, in which he had fought on the anti-fascist side and been wounded and then chased out of Spain by supporters of Joseph Stalin, his experiences had persuaded him that the majority of “left” opinion was wrong, and that the Soviet Union was a new form of hell and not an emerging utopia. He described the genesis of the idea in one of his two introductions to the book:

. . . for the past ten years I have been convinced that the destruction of the Soviet myth was essential if we wanted a revival of the socialist movement. On my return from Spain I thought of exposing the Soviet myth in a story that could be easily understood by almost anyone . . . However, the actual details of the story did not come to me for some time until one day (I was then living in a small village) I saw a little boy, perhaps ten years old, driving a huge carthorse along a narrow path, whipping it whenever it tried to turn. It struck me that if only such animals became aware of their strength we should have no power over them, and that men exploit animals in much the same way as the rich exploit the proletariat.

I proceeded to analyse Marx's theory from the animals' point of view.

The simplicity of this notion is in many ways deceptive. By undertaking such a task, Orwell was choosing to involve himself in a complex and bitter argument about the Bolshevik revolution in Russia: then a far more controversial issue than it is today. Animal Farm can be better understood if it is approached under three different headings: its historical context; the struggle over its publication and its subsequent adoption as an important cultural weapon in the cold war; and its enduring relevance today.

Our Giant Banking Crisis–What to Expect

Krugman_wells_1-051310_jpg_230x464_q85Robin Wells and Paul Krugman in the NYRB:

From an economist’s point of view, there are two striking aspects of This Time Is Different. The first is the sheer range of evidence brought to bear. Reading Reinhart and Rogoff is a reminder of how often economists take the easy road—how much they tend to focus their efforts on times and places for which numbers are readily available, which basically means the recent history of the United States and a few other wealthy nations. When it comes to crises, that means acting like the proverbial drunk who searches for his keys under the lamppost, even though that’s not where he dropped them, because the light is better there: the quarter-century or so preceding the current crisis was an era of relative calm, at least among advanced economies, so to understand what’s happening to us one must reach further back and farther afield. This Time Is Different ventures into the back alleys of economic data, accepting imperfect or fragmentary numbers as the price of looking at a wide range of experience.

The second distinguishing feature is the absence of fancy theorizing. It’s not that the authors have anything against elaborate mathematical modeling. Professor Rogoff’s influential 1996 book Foundations of International Macroeconomics, coauthored with Maurice Obstfeld, contains literally hundreds of fairly abstruse equations. But This Time Is Different takes a Sergeant Friday, just-the-facts-ma’am approach: before we start theorizing, let’s take a hard look at what history tells us. One side benefit of this approach is that the current book manages to be both extremely useful to professional economists and accessible to the intelligent lay reader.

The Reinhart-Rogoff approach has already paid off handsomely in making sense of current events. In 2007, at a time when the wise men of both Wall Street and Washington were still proclaiming the problems of subprime “contained,” Reinhart and Rogoff circulated a working paper—now largely subsumed into Chapter 13 of This Time Is Different—that compared the US housing bubble with previous episodes in other countries, and concluded that America’s profile resembled those of countries that had suffered severe financial crises. And sure enough, we had one too. Later, when many business forecasters were arguing that the deep recession would be followed by a rapid, “V-shaped” recovery, they circulated another working paper, largely subsumed into Chapter 14, describing the historical aftermath of financial crises, which suggested that we would face a prolonged period of high unemployment—and so we have.