Category: Recommended Reading
All sophisticated life on the planet Earth may owe its existence to one freakish event
Ed Yong in Nautilus:
At first glance, a tree could not be more different from the caterpillars that eat its leaves, the mushrooms sprouting from its bark, the grass growing by its trunk, or the humans canoodling under its shade. Appearances, however, can be deceiving. Zoom in closely, and you will see that these organisms are all surprisingly similar at a microscopic level. Specifically, they all consist of cells that share the same basic architecture.
These cells contain a central nucleus—a command center that is stuffed with DNA and walled off by a membrane. Surrounding it are many smaller compartments that act like tiny organs, carrying out specialized tasks like storing molecules or making proteins. Among these are the mitochondria—bean-shaped power plants that provide the cells with energy.
This combination of features is shared by almost every cell in every animal, plant, fungus, and alga, a group of organisms known as “eukaryotes.”
Bacteria showcase a second, simpler way of building a cell—one that preceded the complex eukaryotes by at least a billion years. These “prokaryotes” always consist of a single cell, which is smaller than a typical eukaryotic one and bereft of internal compartments like mitochondria and a nucleus. Even though limited to a relatively simple cell, bacteria are impressive survival machines. They colonize every possible habitat, from miles-high clouds to the deep ocean. They have a dazzling array of biological tricks that allow them to cause diseases, eat crude oil, conduct electric currents, draw power from the Sun, and communicate with each other.
Still, without the eukaryotic architecture, bacteria are forever constrained in size and complexity. Sure, they have their amazing skill sets, but it’s the eukaryotes that cover the Earth in forest and grassland, that navigate the planet looking for food and mates, that build rockets to Mars.
The transition from the classic prokaryotic model to the deluxe eukaryotic one is arguably the most important event in the history of life on Earth. And in more than 3 billion years of existence, it happened exactly once.
More here.
Can Fruit Flies Be Bred to Detect Cancer?
Tuan C. Nguyen in Smithsonian:
Bees possess a sense of smell 100 times more sensitive than the human nose. With 170 odor receptors at their disposal, they're able to recognize the presence of faint metabolic gases emitted by cancer cells during the earliest stages of disease. A handful of scientists are looking into ways that insects might better relay this information, and are keen to incorporate bugs with this unique ability in a clinical setting. Researchers at the University of Georgia, for instance, have invented a handheld device containing parasitic wasps trained to move toward certain odors. They then use computer software that analyzes film of the wasps' movements to determine which patterns indicate that a smell has been positively identified. As I covered late last year, Christina Soares, a British industrial designer, applied an elegant approach to behavioral training, in developing a glass apparatus called Bee's. She made it so that merely introducing gases containing disease biomarkers, like a patient's breath, would cause a colony of bees to swarm into the test chamber.
But perhaps the most promising method for using insects to diagnose tumors comes from a recent experiment carried out by researchers from the University of Konstanz in Germany and the University La Sapienza in Italy, which demonstrated that fruit flies can be genetically modified to glow the moment they come in contact with these volatile molecules. It doesn’t get more straightforward than that. A fruit fly possesses less than half as many odor-sensing receptors as a bee, but its olfactory system is apparently still sensitive enough to distinguish cancerous cells from healthy ones, according to the team's report. Moreover, the researchers found that the receptor neurons on the flies' antennae were able to differentiate between five types of breast cancer.
More here.
Thursday, February 6, 2014
Ice dancing, pure and elegant
Morgan Meis in The Smart Set:
The Winter Olympics are, in essence, about putting things on your feet. This is a function of the weather. You cannot go barefoot into the snow and ice. In the summer, you can run around with nothing on at all. That’s what the ancient Greeks used to do when they had their Olympic games. You can see pictures of it on ancient vase paintings. The Greeks jumped and ran and threw things in a state of total nudity. The Olympic games – in their original form more than two thousand years ago – were about the beauty, grace, and possibility of the human body in its purity.
But what happens to the human body when you put it on frozen ground? It becomes a plodder, struggling laboriously through the snow. Or it becomes a slipper and slider, working to find traction on treacherous sheets of ice. Humans on frozen ground are, generally, comical and sad. It is only a matter of time before the human is going to fall down, ingloriously, limbs akimbo, and hit the ground with a crunch.
Or so it was until people started strapping things to the bottoms of their feet. Ötzi – the prehistoric iceman from the Italian Alps – was found wearing a broad-bottomed pair of snowshoes. He wasn’t skiing, exactly, or even snowshoeing in the modern sense of the term. But he had figured out the basic idea: You cannot traverse the snow and ice efficiently unless you take drastic action.
More here.
Penelope Fitzgerald: The core of her mystery
A. N. Wilson at The Times Literary Supplement:
Whereas some writers alternate between writing fiction and non-fiction, and there is little connection between the two activities, in Fitzgerald’s case, the three biographies are all in their different ways templates for reading her fiction. Hermione Lee makes the striking observation that it was not a novel, but the biography of an all but forgotten poet, Charlotte Mew, which marks the pivotal moment of Fitzgerald’s career as a writer: “[Charlotte Mew and Her Friends, 1984] is the crucial turning-point, the hinged door, between what, in another writer, you might call ‘early’ and ‘late’ work”. When, in Camden Town in 1928, Mew took her own life by drinking a bottle of Lysol, she was the age Fitzgerald was when she published her first book. A local paper, reporting the suicide, spoke of her as “Charlotte New, said to be a writer”. Characteristically, Fitzgerald, who had come to cherish the tragic poet, did not end her book on this grotesque note, but with a gentle diminuendo. “For a short while, she recovered consciousness, and said, ‘Don’t keep me, let me go’. This was her last attempt to speak to anyone, this side of silence.” Known only for a few poems (one of which, “The Farmer’s Bride”, was a great favourite of Thomas Hardy), Mew spent years of her life not writing at all, subsumed instead in her family’s various madnesses, and in domestic trivia – the difficulty of paying the rent for increasingly unpleasant lodgings shared with a demanding mother and a dippy artistic sister. Life was punctuated by the drama of falling painfully and unrequitedly in love with women. Mew clearly stood for something in Fitzgerald’s self-image. “She was struggling with the three great miseries of her life, the kitchen range (which kept going out), the boiler (which threatened to blow up) and ’flu.” Years and years would go by without Mew doing any writing, so obsessed was she by her mother’s illnesses or the boiler going wrong. Hard to know, then, in what sense she was a writer at all – except that she thought of herself as one.
more here.
A microchip for metastasis
From Phys.Org:
Nearly 70 percent of patients with advanced breast cancer experience skeletal metastasis, in which cancer cells migrate from a primary tumor into bone—a painful development that can cause fractures and spinal compression. While scientists are attempting to better understand metastasis in general, not much is known about how and why certain cancers spread to specific organs, such as bone, liver, and lungs. Now researchers from MIT, Italy, and South Korea have developed a three-dimensional microfluidic platform that mimics the spread of breast cancer cells into a bonelike environment.
The microchip—slightly larger than a dime—contains several channels in which the researchers grew endothelial cells and bone cells to mimic a blood vessel and bone side-by-side. They then injected a highly metastatic line of breast cancer cells into the fabricated blood vessel. Twenty-four hours later, the team observed that twice as many cancer cells had made their way through the vessel wall and into the bonelike environment than had migrated into a simple collagen-gel matrix. Moreover, the cells that made it through the vessel lining and into the bonelike setting formed microclusters of up to 60 cancer cells by the experiment's fifth day.
More here.
When paradise was on the map
Toby Lester in the Boston Globe:
Where, exactly, was the Garden of Eden? Few people stay awake at night worrying about that anymore, but for more than a millennium, from the early Middle Ages well into the Renaissance, plenty of serious thinkers, especially in the Christian West, felt compelled to grapple with the question. And not unjustifiably. The Bible, after all, opens by describing Eden as an actual place in the world, located “away to the east” at the source of four great rivers, among them the very real Tigris and Euphrates.
The quest to locate paradise—a word used by the ancient Medians and Persians to mean a walled enclosure, by the early Hebrews to mean an orchard, and by the Greeks and Romans in Egypt to mean a well-watered royal park—began in earnest in the fifth century AD, after St. Augustine made the case for its physical reality. In the centuries that followed, medieval authorities matter-of-factly placed it at the easternmost limits of the world. “Asia includes many provinces and regions,” Isidore of Seville wrote in the seventh century. “I shall briefly list their names and locations, starting with Paradise.” Seven hundred years later, the conventional wisdom hadn’t changed. “The learned conclude,” the English chronicler Ranulf Higden declared, “that the Earthly Paradise is located in the farthest east”…
Starting in the eighth century or so, it seems, medieval Christians began putting paradise on their maps: a tiny walled garden here; four converging rivers there; a cute little Adam and Eve in the nude confronting a serpent. The illustrations—and the audacious idea of putting paradise on a map at all—suggest a fetchingly naive world view. But, as Scafi takes pains to point out in both books, geographical precision wasn’t the goal of most medieval cartography. Instead it involved something much richer and stranger: an attempt to project the full narrative of Christian history onto a geographical backdrop. That’s why paradise had to be on the map. It was the place on Earth where both time and space began. Farthest east, in other words, lay at the temporal and geographical edge of things, where the known abutted the unknown and the unknowable.
Read the rest here.
A short history of Polish Jewish tavernkeeping
Glenn Dynner in OUP blog:
So much of East European Jewish history is viewed through the lens of antisemitism and violence. But there is a reason that the Jews of Eastern Europe (mainly in the vast Polish-Lithuanian areas annexed by Russia, Prussia, and Austria at the end of the 18th century) formed three-fourths of the world’s entire Jewish population. Jews inhabited crucial economic niches, especially the nobility-dominated liquor trade, as this image by the Polish artist Gustaw Pillati shows.
The Jewish-run tavern became the center of local Christians’ leisure, hospitality, business, and even religious festivities. Luckily for Jews, the nobles who owned the taverns believed that only Jews were sober enough to run taverns profitably. However, reformers and government officials blamed Jewish tavernkeepers for epidemic peasant drunkenness, as the following image by Grabowski illustrates, and sought to drive Jews out of the liquor trade.
Read the rest here.
Stono Rebellion (1739)
From Blackpast.org:
On Sunday, September 9th, 1739 the British colony of South Carolina was shaken by a slave uprising that culminated with the death of sixty people. Led by an Angolan named Jemmy, a band of twenty slaves organized a rebellion on the banks of the Stono River. After breaking into Hutchinson’s store the band, now armed with guns, called for their liberty. As they marched, overseers were killed and reluctant slaves were forced to join the company. The band reached the Edisto River where white colonists descended upon them, killing most of the rebels. The survivors were sold off to the West Indies. The immediate factors that sparked the uprising remain in doubt. A malaria epidemic in Charlestown, which caused general confusion throughout Carolina, may have influenced the timing of the Rebellion. The recent (August 1739) passage of the Security Act by the South Carolina Colonial Assembly may also have played a role. The act required all white men to carry firearms to church on Sunday. Thus the enslaved leaders of the rebellion knew their best chance for success would be during the time of the church services when armed white males were away from the plantations.
More here. (Note: One post every day throughout February will be dedicated to Black History Month.)
As You Like It, Act I, Scene VII
All the world's a stage,
And all the men and women merely players;
They have their exits and their entrances,
And one man in his time plays many parts,
His acts being seven ages. At first, the infant,
Mewling and puking in the nurse's arms.
Then the whining schoolboy, with his satchel
And shining morning face, creeping like snail
Unwillingly to school. And then the lover,
Sighing like furnace, with a woeful ballad
Made to his mistress' eyebrow. Then a soldier,
Full of strange oaths and bearded like the pard,
Jealous in honor, sudden and quick in quarrel,
Seeking the bubble reputation
Even in the cannon's mouth. And then the justice,
In fair round belly with good capon lined,
With eyes severe and beard of formal cut,
Full of wise saws and modern instances;
And so he plays his part. The sixth age shifts
Into the lean and slippered pantaloon,
With spectacles on nose and pouch on side;
His youthful hose, well saved, a world too wide
For his shrunk shank, and his big manly voice,
Turning again toward childish treble, pipes
And whistles in his sound. Last scene of all,
That ends this strange eventful history,
Is second childishness and mere oblivion,
Sans teeth, sans eyes, sans taste, sans everything.
William Shakespeare
David Shields’s Real Problem
Justins Evans in The Point:
I sometimes get more pleasure from learning a thing’s name than from learning about the thing itself. When, a few years ago, my then girlfriend offered me a potato pancake, I wasn’t impressed, even though she told me about the history behind it. When she called it a latke, on the other hand, I was thrilled. The same thing happened when I found, in my college’s listings, the course title “Literature and Phenomenology.” I had no idea what the latter was, but—phenomenology—it had to be fascinating. This effect is heightened when it comes to the particularly useless or obscure. Take the jargon of rhetoric: anacoluthon, antanaclasis, asyndeton. Soraismus. Lovely. Now, I’m not praising myself. People like me are a less enthusiastic, less entertaining—“Did you say I’m self-righteous? I think you mean comminatory”—version of that guy who makes six to ten puns per day. Such close attention to the sound of language can come at the expense of attention to its meaning. I’m not proud of my tendency to ignore this fact.
I went to college in the late Nineties, which made the problem worse; back then new ideas could be expressed only in new and fun-sounding words or phrases (Rhizome. Ideological sublime). I hadn’t learned to write in the margins of my books, so if you flick through my copy of, say, The Foucault Reader, I won’t be embarrassed by over-enthusiastic exclamation marks or all-caps scribblings of yes! But I know what caught my ear because I marked passages in pen, sometimes quite insistently. And my love of big, complicated sounds (Captatio benevolentiae!) must have led to a love of big, complicated ideas; I obviously enjoyed the sound of “polymorphous techniques of power,” and at some point may even have come to understand what it meant.
More here.
Sebastião Salgado: The silent drama of photography
Ants Playing Chess Find New Solutions To Old Problem
Douglas Main in Popular Science:
Remove all the pieces from a chess board except for one knight. Then try to move the knight across all 64 squares of the board, touching each once. (As a reminder, knights move in a L-shape, two spaces in one direction, and then one space left or right, or up or down, at a 90- degree angle.) This so-called “knight's tour” is very difficult to achieve for a single person, but mathematicians have calculated that there are a mind-boggling number of ways to pull it off. If you end up at the spot you started, you'd be completing a so-called “closed tour.” There aremore than 26 trillion ways to do this. If you merely touch every spot, without returning to your point of origin, it's called an open tour. The number of ways to do this is so large that scientists haven't calculated it.
Searching for new solutions to the knight's tour, a problem that has intrigued mathematicians for centuries, University of Nottingham computer scientist Graham Kendall and a colleague turned to simulated ants. They used the ant colony optimization algorithm, a swarm intelligence technique based on the behavior of ants looking to find a path between their colony and a food source. It works like this, as Kendall explains at The Conversation:
A computer program is used to simulate a population of ants. These ants are assigned the task to find a solution to a problem. As each ant goes about their task they lay a pheromone trail – a smelly substance that ants use to communicate with each other. In the simulated algorithm, the most successful ants (the ones that solve the problem better), lay more pheromone than those that perform poorly.
This program is repeated hundreds of thousands of times, placing more “pheromones” on paths that complete a tour. But a balance must be struck between reinforcing paths that work, and emphasizing finding new trails.
Using the program, Kendall and his colleague found nearly 500,000 novel solutions to the knight's tour. Who knew that (simulated) ants could find new answers to a question that has intrigued peope for centuries?
More here.
Wednesday, February 5, 2014
The Road Back: Frost’s Letters Could Soften a Battered Image
Jennifer Schuessler in The NYT:
Few figures in American literature have suffered as strangely divided an afterlife as Robert Frost.
Even before his death in 1963, he was canonized as a rural sage, beloved by a public raised on poems of his like “Birches” and “The Road Not Taken.” But that image soon became shadowed by a darker one, stemming from a three-volume biography by his handpicked chronicler, Lawrance Thompson, who emerged from decades of assiduous note-taking with a portrait of the poet as a cruel, jealous megalomaniac — “a monster of egotism” who left behind “a wake of destroyed human lives,” as the critic Helen Vendler memorably put it on the cover of The New York Times Book Review in 1970.
Ever since, more sympathetic scholars have tried, with limited success, to counter Mr. Thompson’s portrait, which was echoed most recently in a short story by Joyce Carol Oates, published by Harper’s Magazine last fall, depicting Frost as repellent old man angrily rebutting a female interviewer’s charges of arrogance, racism and psychological brutality to his children.
But now, a new scholarly work may put an end to the “monster myth,” as Frost scholars call it, once and for all. Later this month, Harvard University Press will begin publishing “The Letters of Robert Frost,” a projected four-volume edition of all the poet’s known correspondence that promises to offer the most rounded, complete portrait to date.
More here.
Jonathan Haidt: Why Sam Harris is Unlikely to Change his Mind
Jonathan Haidt in This View of Life:
Reason has long been worshipped by philosophers and intellectuals. In Plato’s dialogue Timaeus, the gods created humankind with a soul of perfect rationality and inserted it into our spherical heads, which were “the most divine part of us and the lord of all that is in us.” (The Gods then realized that they had to create necks, to keep reason insulated from the seething passions of the rest of the body.) During the “age of reason,” the French revolutionaries pulled the Christs and crucifixes out of the cathedrals and replaced them with images of reason. And in our own time, the New Atheists have written books and started foundations urging people to fight religion with reason.
The New Atheist Sam Harris has even gone so far as to argue, in his book The Moral Landscape, that reason and science can tell us what is right and wrong. Morality is—in his definition—limited to questions about “the well-being of conscious creatures.” Well-being can be measured objectively, he says, by methods such as fMRI scans. Therefore, whatever practices, customs, and ways of living maximize those measurements are morally correct; others are morally wrong. He does not say that there is a single best society (hence the image of a landscape, with multiple peaks). But he claims that moral values are facts, no different from the kinds of facts discovered by chemists. Scientific methods give correct answer to questions in chemistry, and they can therefore do so for morality as well. Harris’s confidence in his reasoned argument is so strong that he has issued The Moral Landscape Challenge: He will personally pay $10,000 to anyone who submits an essay so logically compelling that it makes him change his mind and renounce his views.
More here.
How Netflix Reverse Engineered Hollywood
Alexis C. Madrigal in The Atlantic:
If you use Netflix, you've probably wondered about the specific genres that it suggests to you. Some of them just seem so specific that it's absurd. Emotional Fight-the-System Documentaries? Period Pieces About Royalty Based on Real Life? Foreign Satanic Stories from the 1980s? If Netflix can show such tiny slices of cinema to any given user, and they have 40 million users, how vast did their set of “personalized genres” need to be to describe the entire Hollywood universe? This idle wonder turned to rabid fascination when I realized that I could capture each and every microgenre that Netflix's algorithm has ever created.
