The gut’s ‘friendly’ viruses revealed

From Nature:

News_2010_253_bacteriophage In the latest exploration into the universe of organisms inhabiting our bodies, microbiologists have discovered new viral genes in faeces. They find that the composition of virus populations inhabiting the tail ends of healthy intestines (as represented in our stools) is unique to each individual and stable over time. Even identical twins — who share many of the same intestinal bacteria — differed in their gut's viral make-up. More than 80% of the viral genetic sequences found, which included sequences characteristic of both animal and bacterial viruses, have never been reported previously. “This is a largely unexplored world,” says Jeffrey Gordon at Washington University in St Louis, Missouri, and an author on the paper, which is published in Nature today1. “We are truly distinct lifeforms — sums of microbial and human parts.”

More than 10 trillion bacteria normally inhabit the gastrointestinal tract, where they synthesize essential amino acids and vitamins, produce anti-inflammatory factors and help break down starches, sugars and proteins that people could not otherwise digest. Within and among these bacteria live bacterial viruses, or bacteriophages, which affect bacterial numbers and behaviour as they either prey on bacteria or co-exist with them, shuttling genes from one bacterium to another. This microscopic dynamic ecosystem affects our lives in ways we still do not fully understand. Indeed, the rise in the incidence of food allergies in Western societies has led to hypotheses that extreme hygiene disrupts the ability of microbes to colonize human guts, resulting in a lack of tolerance to usually harmless foods.

More here.