Clifford Geertz, Cultural Anthropologist, Is Dead at 80

Andrew L. Yarrow in the New York Times:

01geertzClifford Geertz, the eminent cultural anthropologist whose work focused on interpreting the symbols he believed give meaning and order to people’s lives, died on Monday in Philadelphia. He was 80 and lived in Princeton, N.J.

The cause was complications after heart surgery, according to an announcement by the Institute for Advanced Study in Princeton, where he had been on the faculty since 1970.

Best known for his theories of culture and cultural interpretation, Mr. Geertz was considered a founder of interpretive, or symbolic, anthropology. But his influence extended far beyond anthropology to many of the social sciences, and his writing had a literary flair that distinguished him from most theorists and ethnographers.

More here.



The author of Sophie’s Choice and The Confessions of Nat Turner has died

From Guardian:

Styron2_1 The Pulitzer Prize-winning novelist William Styron, author of The Confessions of Nat Turner and Sophie’s Choice, has died. He was 81. Styron’s daughter, Alexandra, said the author died of pneumonia at Martha’s Vineyard Hospital in Massachusetts, on Wednesday. Styron, who had homes in Martha’s Vineyard and Connecticut, has been in failing health for a long time. Styron was a Virginia native, whose fascinations with race, class and personal guilt led to such tormented narratives as Lie Down in Darkness and The Confessions of Nat Turner, which won the Pulitzer Prize despite protests that the book was racist and inaccurate.

A lifelong liberal, Styron was involved in many public causes, from supporting a Connecticut teacher suspended for refusing to say the oath of allegiance, to advocating human rights for Jews in the Soviet Union. In the 90s, he was one of a group of authors and historians who successfully opposed plans for a Disney theme park near the Manassas National Battlefield in northern Virginia.

Styron found writing an increasing struggle in his latter years. He was reportedly working on a military novel, yet published no full-length work of fiction after Sophie’s Choice, which came out in 1979. He remained well-connected, however, socialising with President Clinton in Martha’s Vineyard, and joining Arthur Miller and Gabriel Garcia Marquez on a delegation that met with Cuban leader Fidel Castro in 2000.

More here.

Yes, Red Wine Holds Answer

   From The New York Times:

Mice_3 Can you have your cake and eat it? Is there a free lunch after all, red wine included? Researchers at the Harvard Medical School and the National Institute on Aging report that a natural substance found in red wine, known as resveratrol, offsets the bad effects of a high-calorie diet in mice and significantly extends their lifespan. Their report, published electronically yesterday in Nature, implies that very large daily doses of resveratrol could offset the unhealthy, high-calorie diet thought to underlie the rising toll of obesity in the United States and elsewhere, if people respond to the drug as mice do.

Resveratrol is found in the skin of grapes and in red wine and is conjectured to be a partial explanation for the French paradox, the puzzling fact that people in France enjoy a high-fat diet yet suffer less heart disease than Americans.

The researchers fed one group of mice a diet in which 60 percent of calories came from fat. The diet started when the mice, all males, were a year old, which is middle-aged in mouse terms. As expected, the mice soon developed signs of impending diabetes, with grossly enlarged livers, and started to die much sooner than mice fed a standard diet. Another group of mice was fed the identical high-fat diet but with a large daily dose of resveratrol (far larger than a human could get from drinking wine). The resveratrol did not stop them from putting on weight and growing as tubby as the other fat-eating mice. But it averted the high levels of glucose and insulin in the bloodstream, which are warning signs of diabetes, and it kept the mice’s livers at normal size.

More here.

Wednesday, November 1, 2006

a nasty piece of work

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Kingsley Amis was a prominent figure in English letters from the mid 1950s on, but whether this was because his clubbable personality automatically attracted publicity or because there was enduring worth in his books is more difficult to answer; hence my use of ‘prominent’ rather than ‘significant’. Zachary Leader is in no doubt that Amis was a major literary figure and makes extraordinary and, I submit, exaggerated claims for his importance. Let me attempt a judicious summing-up. Amis was a good minor poet in the Robert Graves tradition (Graves was one of his heroes), a writer who insisted on precise craftsmanship and lucid meanings in verse; he had no time for the elaborate symbolic apparatuses of W B Yeats, T S Eliot, Wallace Stevens et al — authors whose work often does require a concordance before one can understand it. He was a good minor comic novelist, not in the class of Evelyn Waugh or P G Wodehouse or even, for my money, Peter de Vries; but there is no denying that Amis could often be extremely funny. He was an essayist of high talent, though again not quite in the premier division with the likes of Gore Vidal. And by all accounts he was a brilliant mimic, a superb raconteur and a sparkling conversationalist. Not a bad man, then, to have as a dinner-table companion. But is he important enough to warrant a 900-page biography? Certainly not.

more from Literary Review here.

ruination displaces celebration

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DESCENDING TO THE BASEMENT of the Schaulager—Herzog & de Meuron’s sand-encrusted bunker with its slashing gash of a window—one was beset by a sound that seemed oddly antique, like that of typewriter keys or rotary phone dials: the whir and clatter of a film projector. It was apparent in that sound, now threatened with obsolescence, that Tacita Dean’s retrospective (organized by Theodora Vischer) was called “Analogue” for both polemical and nostalgic reasons. “Analogue, it seems, is a description,” the artist writes in the introduction to the exhibition catalogue, “a description, in fact, of all things I hold dear.” Dean’s fidelity to 16-mm film and its bulky, outmoded apparatus, as digital technology quickly renders them obsolete, defines her art and her outlook; the materiality of the medium seems a bulwark against a fast-advancing future where imagery is insubstantial, endlessly transmutable, there but not there. Dean is no loon or Luddite in her lost-cause allegiance to celluloid. As the poet of imperiled sites, abandoned dwellings, defunct technology, and architectural relics, she is at once an English romantic, an aesthetic descendant of Turner, Gerard Manley Hopkins, and Michael Powell, and a recalcitrant materialist. She adheres to the concrete and quantifiable even as her artworks often proceed from found objects, chance events, and coincidences, and her films rely on evanescent, unpredictable nature for their mysterious beauty—twilight skies tinted mint, rose, peach, and darkling purple (Boots, 2003; Fernsehturm, 2001); blackbirds gathering to ominous mass in the dusk (Pie, 2003); a triptych of grass, trees, and sky invaded by lowing cows (Baobab, 2002); seascapes roiling and becalmed (Bubble House, 1999; Sound Mirrors, 1999); late afternoon light glowing molten on glass or burnished wood (Fernsehturm; Boots; Palast, 2004).

more from Artforum here.

the wildest newspaper in the country

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People likened Thomas to a Wild West newsman, an X-rated Walter Winchell, a blues lyricist. In later years he was also called an ancestor of gangsta rap. But he considered himself none of these things—in his own eyes he was a crusader against crime, an exposer of wrongdoing, and he had absolute confidence in the righteousness of every word that he wrote. His persona in print was that of a hanging judge; he thought of his paper as a public service. But the man also liked to sell newspapers. At its peak in the 1970s it had newsstand sales of 50,000. Thomas relied not on advertising but on circulation—the popular vote—and at a time when black business success came rarely, people around St. Louis referred to the editor as a “black millionaire.”

more from The Believer here.

Cranial descaling

From Guardian:

Brain_27 John Lloyd and John Mitchinson are the authors of The Book of General Ignorance. It is based on the hit BBC2 TV show QI (short for Quite Interesting), starring Stephen Fry and Alan Davies.

4. Cassell’s Dictionary of Slang by Jonathan Green
To finally kill off Johnson’s ‘harmless drudge’ calumny, here is a modern dictionary that is the work of a real human being. Green’s book goes further, deeper and wider than any other record of slang and manages to combine unimpeachable historical scholarship with the appropriate wit and raciness. (apparently ‘gooseberry bush’ was a 19th century euphemism for pubic hair). The OED of the street.

5. Labyrinths of Reason by William Poundstone
Subtitled ‘Paradoxes, Puzzles and the Frailty of Knowledge’, this is a profound and endlessly fascinating collection of philosophical experiments that leave the reader unable to settle back into old and lazy ways of thinking. Poundstone is a sceptic in the richest sense of the term and whether he’s writing on Sherlock Holmes or parallel worlds, his writing remains sparklingly clear and accessible. Dental floss for the brain.

6. Thought As A System by David Bohm
Another mind-expanding book about thinking. Bohm was a leading quantum physicist and worked on the Manhattan project. He became a close friend of the Indian philosopher Krishnamurti and this book is a record of Bohm’s seminars where he reviewed their work together. It is a genuinely visionary meeting of east and west and of philosophy with spirituality and politics. Anyone who worries about our future needs to read it.

More here.

Crows share tricks of the trade

From MSNBC:

Crow_hmed_4p Bird brained they might be, but crows are the MacGyvers of the avian world, able to turn twigs and even their own feathers into tools for getting at hard-to-reach food. But while young crows are born with a propensity for crafting tools, it’s only after watching their elders make and use tools that they become truly proficient, a new study suggests.

Compared to other crows, those from the Pacific island of New Caledonia, located east of Australia, are master tool makers and users, second only to humans and on level with chimps when it comes to finding novel uses for everyday objects. In their natural forest environment, the midnight-black birds fashion twigs, leaves and even their own feathers into tools for rooting out insects in dead wood.

The crows craft tools to specific needs. They examine a problem and then pick or design an appropriate tool. For example, faced with a snack lodged in a small tree hole, a crow will prune and adjust a leafy oak branch to just the right width to poke into the hole.

More here.

Tuesday, October 31, 2006

Silas Smimmons, 1895-2006

In The New York Times:

Si Simmons, the former Negro leagues baseball player who was believed to be the longest-living professional ballplayer in history, died Sunday in at a retirement home in St. Petersburg, Fla. He was 111.

His death was announced by a spokeswoman for the retirement home.

A Philadelphia native, Simmons was a left-handed pitcher for the local Germantown Blue Ribbons beginning in either 1912 or 1913, in the primordial and poorly recorded days of organized black baseball. He played for Germantown and other clubs for many years after that, including the New York Lincoln Giants of the Eastern Colored League in 1926 as well as the Negro National League’s Cuban Stars in 1929.

The fact that Simmons was still alive was unknown to baseball’s avid research community until the summer of 2006, when a genealogist discovered he was living in the St. Petersburg, Fla., nursing home.

Romans have never been more popular

Allan Massie in Prospect Magazine:

Romans_1In his short book “The Future of the Classical,” Salvatore Settis, director of the Scuola Normale Superiore in Pisa, writes that “the marginalisation of classical studies in our education systems and our culture at large is a profound cultural shift that would be hard to ignore.” At the same time, he asks: “What place is there for the ancients in a world… characterised by the blending of peoples and cultures, the condemnation of imperialism, the end of ideologies, and the bold assertion of local traditions, and ethnic and national identities in the face of all forms of cultural hegemony? Why seek out common roots, if everyone is intent on distinguishing their own from those of their neighbour?”

The points are well made, the questions pertinent, though the implication is not always as cogent as Settis supposes. After all, one characteristic of the Roman world was a very similar “blending of peoples and cultures,” as eastern gods and goddesses were introduced to Rome and worshipped there, and as the emperors came more often from the provinces than from Italy, let alone Rome.

More here.

Berman’s The Primacy of Politics, a Crooked Timber Online Seminar

For those of you who’ve missed it, Crooked Timber has an online seminar of Sheri Berman’s The Primacy of Politics: Social Democracy and the Making of Europe’s Twentieth Century. Henry Farrell, Tyler Cowen of Marginal Revolution, Mathew Yglesias, John Quiggin, SEIU’s Jim McNeill, and our own Mark Blyth offer insights and critques, Berman responds, and readers chime in. From Mark’s piece:

Social democracy may have been a good idea, but it was also a post-war phenomenon brought about by the devastation fascism brought upon itself. If World War Two hadn’t happened, if Strasser had bested Hitler, if the xenophobia had stayed in the bottle, would fascism have fallen? While counterfactuals are at best a parlor game, they are nonetheless helpful in clarifying possibilities. If the war had not happened, and if the alternative of the Soviet Union had not risen to post-war prominence, would the need to placate the working classes of Europe with welfarism and democracy been so pressing? Would the victory have come about at all, never mind later than advertised.

In short, if we read the history of social democracy as a highly contingent outcome, it raises an interesting angle on contemporary developments. If social democracy was a species of fascism (or vice versa), do we need a re-born fascism now to (re)energize the ‘dead-men walking’ parties of social democracy in the present?

Paris and Practice

Helmut at Phronesisaical:

Apart from a work weekend of torture and globalization and developing a new seminar on ethics in management and leadership, my thoughts have wandered over to, well, Paris, and to a problem that constantly arises for a philosopher teaching at a public policy school: the moment of policy practice. There’s a vague relation between these two disparate items. Bear with me, and I’ll see if I can weave them together.

Screenhunter_3_16Paris: Paris is a big city, of course, but it’s also very small. I don’t mean this only in the sense that – like other European cities – it has a center from which the rest of the city radiates, turning the city into something more intimate, walkable, and experientially and historically rich than we usually know with American cities. I mean this also in a sense that a relatively unknown French photographer I like, Michel-Jean Dupierris, has a clever eye for: the tiny, passed-over worlds underlying the city. Paris is grand, yet infinitesimally complex. Dupierris, like other artists before him, notices the small and complex. He has the eye of an abstract expressionist.

More here.

uncle tom lives

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The best-selling American novel of the nineteenth century, “Uncle Tom’s Cabin,” by Harriet Beecher Stowe, does not quite go away, much as many Americans, from black militants to white aesthetes, might wish it. Withina year of its publication, in March of 1852, it had sold three hundred thousand copies, in a country one-thirteenth its present size and—in a surprising show of Victorian globalization—more than two million in the rest of the world. Ten years later, in 1862, Abraham Lincoln allegedly greeted its diminutive author in the White House with the words “So you’re the little woman who wrote the book that started this great war!” The President’s subsequent abolition of slavery and the Union’s hard-won victory in the Civil War would seem to have taken the wind out of Stowe’s fiercely abolitionist novel of ideas, but its melodramatic images—the Kentucky slave Eliza’s flight across the ice-choked Ohio River, pursued by bloodhounds, with her son in her arms; the Louisiana slaveholder Simon Legree’s boastful villainy; fair-haired little Eva’s saintly death and the snaggle-headed black orphan Topsy’s reluctant reformation—persisted, though travestied, in popular plays, shows, films, figurines, and cartoons.

more from John Updike at The New Yorker here.

the third hockney is the best

Hockneylg

All art, perhaps, is at heart an attempt to answer the question, How do we see? In these two shows, Hockney has a range of answers, but the one constant is the search, the gaze. The third David Hockney, the serious one, the important one, has been asking this question for over fifty years now, and his answers are consistently interesting and surprising. The body of work he has accumulated through his restless use of a vast range of media, combined with his solid technique, has given us an artist of the very first rank. Both these exhibitions set out to celebrate Hockney, and they do so magnificently: the NPG’s retrospective of half a century of his portraiture shows a depth and a breadth that is hard to match in any artist working today. There are perhaps rather too many of the very recent portraits – more rigorous selection would have made viewing easier – but there is no slackening off in quality. Annely Juda’s show of the new landscapes indicates that, if anything, David Hockney is having yet another late flowering. In a long career, he has frequently seemed to have reached a peak, only to dart off at a tangent and, in another style, another medium, surpass himself. His most recent work shows a serene, soaring mastery.

more from the TLS here.

nafisi: stooge?

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IF THE UNITED STATES takes military action to prevent Iran from acquiring nuclear weapons, planning for which has been much speculated about but denied by the Bush administration, who will deserve the blame? The Iranian regime, for its brazen defiance of the international ban on nuclear proliferation? America’s neoconservatives, itching to remake the Middle East? Or Azar Nafisi, the Iranian expatriate author of the 2003 women’s book-club fave ‘‘Reading Lolita in Tehran’’?

Hamid Dabashi, a professor of Iranian studies at Columbia University, would blame all three, but it’s his vituperative attack on Nafisi that earned him a spot this month on the cover of the Chronicle of Higher Education.

more from Boston Globe Ideas here.

caravaggio: what a bleeder

Judith

Great stuff, mate” said someone sticking his head through the window of the cab about to take me to St Pancras. “Caravaggio; what a bleeder!”

Too right. Music to my ears. Vox populi, vox dei. And a whole lot better than Carpo Marx in the Sundays giving us all a hard time about the first episode of The Power of Art. We did know we were taking a risk beginning with the most in-your-face of the eight films, lots of sweaty aggression and heavy pathos, but then that was what Caravaggio specialised in. One reviewer complained about the “script” which the actors had to work with but that script (“smell the artichokes”) was drawn entirely from the court records of Caravaggio’s trials and punishments.

more from SImon Schama at The Guardian here.

One for the Ages: A Prescription That May Extend Life

From The New York Times:

Aging15_3 How depressing, how utterly unjust, to be the one in your social circle who is aging least gracefully. In a laboratory at the Wisconsin National Primate Research Center, Matthias is learning about time’s caprice the hard way. At 28, getting on for a rhesus monkey, Matthias is losing his hair, lugging a paunch and getting a face full of wrinkles.

Yet in the cage next to his, gleefully hooting at strangers, one of Matthias’s lab mates, Rudy, is the picture of monkey vitality, although he is slightly older. Thin and feisty, Rudy stops grooming his smooth coat just long enough to pirouette toward a proffered piece of fruit.

Tempted with the same treat, Matthias rises wearily and extends a frail hand. “You can really see the difference,” said Dr. Ricki Colman, an associate scientist at the center who cares for the animals. What a visitor cannot see may be even more interesting. As a result of a simple lifestyle intervention, Rudy and primates like him seem poised to live very long, very vital lives.

This approach, called calorie restriction, involves eating about 30 percent fewer calories than normal while still getting adequate amounts of vitamins, minerals and other nutrients. Aside from direct genetic manipulation, calorie restriction is the only strategy known to extend life consistently in a variety of animal species.

More here.

Elephants not fooled by mirrors

From Nature:

Elephant_1 Elephants possess the highly cerebral ability to recognize their own jumbo reflections in mirrors, scientists have found. Traditionally, only an elite group of animals including humans, chimpanzees and orangutans have been proved to be capable of self-recognition in a mirror. A lone study several years ago also reported that dolphins could recognize their own gaze in a glass. To study the elephants’ behavior, the researchers placed an “elephant-proof, jumbo-sized” mirror, 2.5 metres high by 2.5 metres wide, inside the enclosure of three female Asian elephants (Elephas maximus) at the Bronx Zoo in New York City. The team used a still camera on a roof to observe the animals over a period of five months.

Upon entering the yard, all three elephants ran to inspect the mirror. The elephants, named Happy, Maxine and Patty, immediately investigated the surface by sniffing and touching it with their trunks — even attempting to climb the mirror to look behind it and kneeling down to look under it. They didn’t display threatening behaviour such as trumpeting, which might have been expected if they saw the images as intruder elephants.

More here.

Monday, October 30, 2006

Monday Musing: Milosz v. Gombrowicz

I’m tempted to make the rather bold assertion that the most interesting duo in Western literature of the 20th century is Czeslaw Milosz and Witold Gombrowicz. I say duo because you really have to take the two of them together. When Milosz zigs, Gombrowicz zags, when you’re feeling one way, Milosz expresses it for you, and when the mood shifts, there is Gombrowicz waiting in the wings with a change of pace.

The twentieth century was insane. We forget to remember that. For us, it’s what made us what we are and therefore it has taken on a sense of inevitability, even naturalness. But looking at it from the other way around, from the perspective of those who were going through it and for whom its twists and turns were anything but a foregone conclusion, the century is filled with so many shocks and amazements it is difficult to comprehend. And that, of course, was one of the great, if not the great, themes of literature from the collapse of the Austro-Hungarian empire and the outbreak of WWI to the effective finale to the 20th century in the breakup of the Soviet Union and the reuniting of Western and Eastern Europe.

Through it all, the challenge to the coherence and sustainability of human experience was relentless. If tradition was disrupted and broken down here and there in the 19th century, it was upended completely, remade from the insight out, and sometimes obliterated during the 20th. Again, we don’t often bother to stop and consider how extraordinary that process was. It was by turns exhilarating and terrifying and sometimes both simultaneously. And perhaps the horrors of the twentieth century were all the more horrifying given that the century continuously produced strains of hope that things could possibly be otherwise. Suffering is that much worse the degree to which it is perceived to have been avoidable.

Czeslaw Milosz was as sensitive to these issues as anyone. This is a man who picked his way through the rubble of Warsaw when its ruins were still steaming, when the place was just an open wound. That experience, and the knowledge gained from it, is shot through everything that Milosz ever wrote. For Milosz, man is guaranteed nothing. That’s it. Nothing. And man can be reduced, or reduce himself, to nothing, at any moment.

Gombrowicz too experienced such things. As Milosz says of him, “Gombrowicz lived in an epoch which neither quantitatively nor qualitatively brings to mind any of the previous epochs and which distinguishes itself through ubiquitous cases of ‘infection’ with mass and individual madness.” Man, as Aristotle once mentioned, needs a world, a complicated arrangement of social interactions, in order actually to be man. But that same ordering of complicated social arrangements can also be the vehicle by which human beings destroy themselves and one another.

But Gombrowicz chose flight, literally and metaphorically. From his exile in Argentina he conjured up an absurd mental universe that spins out the problems of experience in countless ‘as if’ scenarios that are so powerful exactly insofar as they make sense despite their insanity. Gombrowicz took flight into the endless malleability of human experience in order to keep a step ahead of the world as it is. That is his particular freedom. It is the freedom of Socrates as Kierkegaard describes him in The Concept of Irony, the freedom that escapes from every possible determination.

Truth be told, this version of freedom annoys Milosz. Because for Milosz, the possibility of meaning in human affairs is dependent on commitment. If nothing else, it is founded on the capacity for human beings to hold experience together even as forces from within and without work to tear it apart. How one does this is not entirely clear but Milosz’s entire oeuvre is the sustained attempt to do so even as he lacks a blueprint. That is a pretty brave literary task to set in front of oneself. From Milosz’s standpoint, Gombrowicz has retreated into his own consciousness instead of forcing himself constantly to confront the problems of the world as it is encountered. Milosz has said that, “what fascinates me is the apple: the principle of the apple, appleness in and of itself. In Gombrowicz, on the other hand, the emphasis is placed on the apple as a ‘mental fact’, on the reflection of the apple in consciousness.”

But then the two come together again, in Milosz’s mind, because Gombrowicz never falls into the trap of those intellectuals who have lost track of the root problems of experience, actual experience, that have been thrown up by the 20th century. Milosz writes that, “A comparison of Gombrowicz with western writers, with Sartre, for example, would reveal, in the case of the latter, a deficiency of a certain type of experience connected with history and specific cultural traditions, a deficiency that is compensated for by theory.”

I think we’re still working this stuff through. And I’ll make one more rash claim. The future right now is in the past. Sometimes it is in the past, the immediate past, where things get clear again. For those of us whose lives stretch from the era of the 20th century into the next one, the most important thing for taking the future seriously is doing work on the things that have recently past. Only now is it becoming even vaguely possible to understand how important are the tentative thoughts put forward by people like Milosz and Gombrowicz. And there are others, back there, waiting for us. We simply have to take seriously the idea that turning our backs on the future is a way of renewing it.

The Future of Science is Open, Part 1: Open Access.

I’ve never had an idea that couldn’t be improved by sharing it with as many people as possible — and I don’t think anyone else has, either.  That’s why I have become interested in the various “Open” movements making increasing inroads into the practice of modern science.  Here I will try to give a brief introduction to Open Access to research literature; in the second instalment I will look at ways in which the same concept of “openness” is being extended to encompass data as well as publications, and beyond that, what a fully Open practice of science might look like.

The original paradigm: Open Source
Although the underlying concept of information as a public good goes back at least to the invention of the printing press and the end of the aristocratic/theocratic duopoly on literacy, programmers were the first people I know of to popularize this sort of “openness” in an academic setting.   Richard Stallman started the GNU Project in 1983/4 as a reaction against the rising influence of proprietary software, and a year or so later founded the Free Software Foundation, which “is dedicated to promoting computer users’ rights to use, study, copy, modify, and redistribute computer programs.”  What Stallman and the FSF mean by “free software” is famously summed up by the dictum, “free as in speech, not free as in beer”; more precisely, they mean “free” as in:   

  •      The freedom to run the program, for any purpose   
  •      The freedom to study how the program works, and adapt it to your needs   
  •      The freedom to redistribute copies   
  •      The freedom to improve the program and release your improvements to the public

Access to the source code is a precondition for these freedoms, and many advocates prefer that the “four fundamental freedoms” also be combined with some form of copyleft (basically a licence which explicitly disallows use of the original resource in any way that restricts the four freedoms for anyone else).  About a decade later the Open Source Initiative appeared, offering itself as a “more pragmatic” approach to free software.  The two definitions are pretty similar, though the OSI version allows some licencing that the FSF considers too restrictive of end users.  Today, both the FSF and the OSI are powerhouse advocates for non-proprietary software, code that you can get your hands on and hack to your heart’s content.  There is a wealth of free software freely available for scientific purposes: for instance, the OpenScience Project maintains a list, as do (inter many alia) the NCEAS, the CBS and Indiana University.  The NIH and EBI both maintain extensive services, there’s an entire Linux distribution for science, SourceForge lists over 350 projects under “scientific”, and a simple google search finds dozens of free applications for molecular biology.

Open Access
By analogy with Open Source, Open Access to the research literature entails the freedom to read, use and redistribute the published results of scholarly research and derivative works based on those publications.  What follows is a version of Peter Suber’s very brief introduction to OA; for more details, see his full Open Access Overview and Timeline of the OA Movement.  The bottom line is this:

Open-access (OA) literature is digital, online, free of charge, and free of most copyright and licensing restrictions. What makes it possible is the internet and the consent of the author or copyright-holder.

Most scholarly journals do not pay authors, who therefore do not lose revenue by publishing under OA conditions.  Thus the controversies about OA to music and film (was Napster “piracy”?  did it cost any actual musicians any money?) do not apply to the scholarly literature, the authors of which are clearly better off if access to their work is not restricted.  Online publishing is much less expensive than its print-only ancestor, but it is not free; the big question of OA is how to pay the bills that do remain without charging access fees.  Nearly all current OA models reduce to one of two basic blueprints: OA archives/repositories, and OA journals.

OA archives or repositories simply make their contents freely available to the world. They may contain preprints (the author’s version prior to peer review), refereed postprints, or both. Archiving preprints does not require any form of permission, and a majority of journals already permit authors to archive their postprints. Archives which comply with the metadata harvesting protocol of the Open Archives Initiative are interoperative and can be searched as though they comprised a single (enormous, virtual) database, using high-level services such as OAIster. There are a number of open-source software packages available for building and maintaining OAI-compliant archives; Peter Suber maintains a list of lists of such archives, and SHERPA maintains a database of journal policies regarding pre/post-print archiving.  Archives cost very little to set up and maintain, and increasing numbers of universities and research institutions are building their own.  PubMed Central, maintained by the NIH, is probably the largest and best-known in biomedical science.  ArXiv, run by Cornell University, is the principal means of transfer of research results for many (if not most) mathematicians and physicists.  Stevan Harnad, a leading advocate of self-archiving, maintains a comprehensive self-archiving FAQ file.

OA journals are in most respects the same sorts of entities as traditional paid-access journals, but without the access fees.  They perform peer review, and make the refereed articles available free to all comers.  They pay the bills in a number of different ways.  About half charge author-side fees, though who actually pays these is widely variable (author, author’s institution, funding body, etc.).  Publishing in an OA journal is obviously 100% compatible with self-archiving.  The DOAJ currently lists nearly 2500 peer-reviewed OA journals, of which more than 700 are searchable at the article level; for larger lists of OA journals which may or may not be peer-reviewed, see JournalSeek or Yahoo’s Free Full Text.  Three of the most prominent OA journal publishers are the Public Library of Science, Hindawi Publishing and BioMed Central, and a number of traditional publishing companies now offer OA options.

A personal example
I have yet to publish any data here in the US, but I published a dozen or so articles while I was at the University of Queensland.  More than half of these are not freely available from the journals in which they were published (J Clin Virol, Virology, Biochim Biophys Acta, Mol Biochem Parasitol, Acta Tropica — all Elsevier journals, pfui! — and Rev Med Virol from Wiley InterScience).  I couldn’t find any full-text copies online using Google Scholar or PubMed, either.  You cannot read these seven papers of mine without paying a fee (usually around $30) or physically going to a library which carries (and has therefore paid for) the journal and issue in question.  Neither can my professional colleagues, unless their institution happens to subscribe to the journal or some package which includes it; these subscription fees are commonly extortionate (Elsevier being a particularly egregious offender).

For you as a taxpayer, this means that you are denied access to information you’ve already paid for (since I’ve always been funded by government grants).  For me as a scientist, it means that more than half of my life’s work to date is, while not useless, certainly of much less use to the world than it might be.  Given that a large part of why I do what I do is that I want to leave the world a better place than I found it, that is simply not acceptable to me.  Fortunately, according to RoMEO, all of the journals concerned allow postprint archiving by authors, so I might be able to rescue it.  Searching for “queensland” in DOAR (one of a number of such directories) leads me to ePrints UQ, so there is a relevant archive for me to use, but there’s a catch: you have to be a current UQ staff member to deposit.  I can (and will) talk to David Harrich, my boss at the time, about archiving all of our HIV papers, since Dave is still at UQ.  My schistosomiasis papers, though, have no one on the author lists who could deposit them, so I’ll have to contact the staff at ePrints UQ and see whether there’s a way for ex-staff to deposit articles.  If there isn’t, I’ll have to either find another repository that will take the articles, or make one of my own.  Since my current employers don’t have an institutional repository, I’m going to have to make that choice anyway for upcoming papers.  Both arXiv and Cogprints will take biology papers, although mine don’t seem to fit into any of their categories, and Peter Suber has mentioned building a Universal Repository in collaboration with the Internet Archive, but I’m not sure if anything has come of that endeavour.  That leaves me with the option of building my own archive, for the purposes of which there are numerous open-source software packages available.  Alternatively, at least as a first step, I could simply upload the papers to my own webspace somewhere and try to make sure the the Internet Archive and Google Scholar know about them, so that they would be available though not interoperable with other repositories.  Finally, there’s one last catch: Elsevier won’t let me use their pdf versions, and I don’t have the original files in most instances.  So whatever I do, I’m going to have to track down the published versions and then reverse-engineer an “unofficial” version.

Why would I go to all this trouble?  Because OA offers significant benefits and advantages to a variety of stakeholders:

Benefits of Open Access
1. Maximal research efficiency.  The usual version of Linus’ Law says that given enough eyeballs, all bugs are shallow — meaning that with enough people co-operating on a development process, nearly every problem will be rapidly discovered and solved.   The same is clearly true of complex research problems. and OA provides a powerful framework for co-operation.  For instance, Brody et al. showed that, for articles in the high-energy physics section of arXiv (one of the oldest archives available for such study), the time between deposit and citation has been decreasing steadily since 1991, and dropped by about half between 1999 and 2003.   Alma Swan  explains: “the research cycle in high energy physics is approaching maximum efficiency as a result of the early and free availability of articles that scientists in the field can use and build upon rapidly”. 

Moreover, the machine readability of a properly formatted body of open access literature opens up immense new possibilities.  Paul Ginsparg, founder of arXiv, observes:

True open access permits any third party to aggregate and data mine the articles, themselves treated as computable objects, linkable and interoperable with associated databases. We are still just scratching the surface of what can be done with large and comprehensive full-text aggregations.

Swan again:

…exciting new developments in text-mining and data-mining are beginning to show what can be done to create new, meaningful scientific information from existing, dispersed information using computer technologies. Research articles and accompanying data files can be searched, indexed and mined using semantic technologies to put together pieces of hitherto unrelated information that will further science and scholarship in ways that we have yet to begin imagining. These technologies are just in their infancy at the moment. Real scientific advances will be made using them but the technologies can only be applied effectively to the open access corpus: literature and data hidden behind journal or databank access restrictions are invisible to the computer tools that can do this work…

Examples of such precocious infants include cheminformatics.org and the family of utilities and tools available through the NIH/NLM’s PubMed interface.

2. Maximal return on public investment.  Just as OA is, at least for now, primarily (though not exclusively) aimed at literature for which the authors are not paid any kind of royalty, so one obvious focus of attention is government-funded research.  Why should taxpayers pay twice, once to support the research and then again when the scientists they are funding need access to the literature?  More importantly, open access to a body of knowledge makes that knowledge more available and useful to researchers, physicians, manufacturers, inventors and others who make of it the various socially desirable outcomes, such as advances in health care, that government funding of research is intended to produce.  Peter Suber has gone over this intuitive position in some detail here.

3. Advantages for authors.  There are well over 20,000 scholarly journals, and even the best-funded libraries can afford subscriptions to only a fraction of them.  OA offers authors a virtually unlimited, worldwide audience: the only access barrier is internet access (which is, of course, cheaper to provide in poorer nations than comprehensive libraries of print journals would be!).  There is a large and steadily growing body of evidence showing that OA measurably increases citation indices (that is, the number of times other papers refer to a given article).  For instance, of the papers published in the Astrophysical Journal in 2003, 75% are also available in the OA arXiv database; the latter papers account for 90% of the citations to any 2003 Astrophysical Journal article, a 250% citation advantage for OA.  Repeating the exercise with other journals returns similar results.

Not only is this of vital importance to academics when it comes to applying for funding or competing for tenure, it’s more or less the whole damn point of publishing research in the first place: so that other people can read and use it!

4. Advantages for publishers: the benefits that accrue to authors of OA works also work to the advantage of publishers: more widely read, used and cited articles translates to more submissions and a wider audience for advertising, paid editorials and other value-add schemes.

5. Advantages for administrators.  One of the best available proxy measures for research impact is citation counting: how many times has a given paper been cited by other researchers in their published work?  This idea led to the development of the impact factor, a measure of a particular journal’s importance within its own field.  These sorts of bibliometric indicators are relied upon heavily by science administrators making decisions about funding, by faculties making decisions about tenure cases, and so on.  Open access, by removing the subscription barriers that splinter the research literature into inaccessible proprietary islands, raises the possibility of vast improvements in our ability to measure and manage scientific productivity.

6. Scalability.  Peter Suber has pointed out that, because it reduces production, distribution, storage and access costs so dramatically, OA “accommodates growth on a gigantic scale and, best of all, supports more effective tools for searching, sorting, indexing, filtering, mining, and alerting –the tools for coping with information overload.”  Online distribution is necessary but not sufficient for scalability, because subscribers to paid-access journals do not have unlimited budgets even if they are enormous institutional libraries.  For end users to keep pace with the explosive growth of available information, the cost of access has to be kept down to the cost of getting online.

Tune in Next Time
In the second instalment, I will look at open access to raw experimental data, cooperation over competition as a research model and the ever-expanding role of the Web in science.  In the meantime, if this has piqued anyone’s interest in OA (and I hope it has!), here are my Simpy collections of open access and open science  links.

One Last Thing
This is an immense topic, and anyone who knows anything much about it will certainly see things I’ve missed or got wrong. That’s what the comments are for! Blogs are conversation tools, and I’d appreciate your feedback.

Update: part 2 is here, part 3 is here.

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